Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcctatgtgctcacccaccttgcctttttgatgcttgataccttttttgcggtgtgtttaggtttcattattatggttcgatatgctatatac...

Basic information

species Zea mays
transcript GRMZM5G862331_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G862331_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g52140.2 (Oryza sativa), 5'ss of exon 2
CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttccta-tgtgctcac---ccaccttgccttt-ttgatgcttgataccttttttgcggtgtgtttaggtttcattattatggttcgatatgctatatac
||||||||||||||| |||||||||| |||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||  ||   |||||||||   |  |||    |||  ||||||||  ||  |||||   | || | |  | | |  | ||   ||    ||  | | |    
CTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAGGCCGCGGCCCTCCGCGACATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgtggtccgccgggtgtgctcactgcctgcctaatttttactgatgcttt-tatgtttttcttgttgcgatctgctatgttcatatcggcctcattcgatct----

upper sequence: GRMZM5G862331_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g52140.1 (Oryza sativa), 5'ss of exon 2
CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttccta-tgtgctca---cccaccttgccttt-ttgatgctt----gataccttttttgcggtgtgtttaggtttcattattatggttcgatatgctatatac---
            ||| |||||||||| |||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||  ||   ||||||||   ||  |||    |||  ||||||||    | |    || ||||| | || |  | |   ||     |  |||||| ||   | |     
------------GACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAGGCCGCGGCCCTCCGCGACATGCAGGCCAAGGTCGCCAAGGAGATGCAAGGTGGTCCGCCGGgtgtgctcactgcctgcctaatttttactgatgcttttatgtttttcttgttgcgatctgctatgttcatatcggcctcattcgatctgtattgtgagga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211420266|gb|FL241379.1|FL241379
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|33093650|gb|CF053644.1|CF053644
EST:     GCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTACATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: GCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211302420|gb|FL241361.1|FL241361
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|71427532|gb|DR808582.1|DR808582
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|28361540|gb|CB239896.1|CB239896
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211302419|gb|FL241360.1|FL241360
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211302415|gb|FL241356.1|FL241356
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211302417|gb|FL241358.1|FL241358
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211302421|gb|FL241362.1|FL241362
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|12047207|gb|BF729346.1|BF729346
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|71419429|gb|DR804766.1|DR804766
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|26559376|gb|CA831611.1|CA831611
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211420260|gb|FL241373.1|FL241373
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|113701557|gb|EE679061.1|EE679061
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211420264|gb|FL241377.1|FL241377
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211422859|gb|FL241387.1|FL241387
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211302413|gb|FL241354.1|FL241354
EST:     GCCGCCGCCCTCCGCGATATGCAGGTCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: GCCGCCGCCCTCCGCGATATGCAGG-CCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211422855|gb|FL241383.1|FL241383
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|91051981|gb|EB162399.1|EB162399
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211302411|gb|FL241352.1|FL241352
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|28361745|gb|CB240101.1|CB240101
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|71436658|gb|DR817708.1|DR817708
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|28361810|gb|CB240166.1|CB240166
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211420263|gb|FL241376.1|FL241376
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|28987157|gb|CB351492.1|CB351492
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|26557352|gb|CA829587.1|CA829587
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211302422|gb|FL241363.1|FL241363
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|78180902|gb|DV551275.1|DV551275
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|9566340|gb|BE475849.1|BE475849
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|31911181|gb|CD651796.1|CD651796
EST:     CGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: CGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211420253|gb|FL241366.1|FL241366
EST:     AGCCGCCTCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211302412|gb|FL241353.1|FL241353
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGC-AAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|28361626|gb|CB239982.1|CB239982
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211302418|gb|FL241359.1|FL241359
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211300286|gb|FL241350.1|FL241350
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211302414|gb|FL241355.1|FL241355
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211420256|gb|FL241369.1|FL241369
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211302424|gb|FL241365.1|FL241365
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211302410|gb|FL241351.1|FL241351
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGARGCAAAGGAGCAGGTGGATGCC-
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211302416|gb|FL241357.1|FL241357
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|60355238|gb|DN222211.1|DN222211
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211422858|gb|FL241386.1|FL241386
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211422860|gb|FL241388.1|FL241388
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211420254|gb|FL241367.1|FL241367
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|101392226|gb|EB818041.1|EB818041
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211420261|gb|FL241374.1|FL241374
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|8577025|gb|BE129662.1|BE129662
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|93015249|gb|EB640769.1|EB640769
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|30087763|gb|CB885969.1|CB885969
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGTTTTTTATTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCT-AGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCC
EST: gi|211420265|gb|FL241378.1|FL241378
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211422856|gb|FL241384.1|FL241384
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|30088074|gb|CB886279.1|CB886279
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211420262|gb|FL241375.1|FL241375
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211420267|gb|FL241380.1|FL241380
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|74237334|gb|DT645248.1|DT645248
EST:     CGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: CGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211420255|gb|FL241368.1|FL241368
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|89759138|gb|DY688052.1|DY688052
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211541161|gb|FL236758.1|FL236758
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|74234517|gb|DT642431.1|DT642431
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211422853|gb|FL241381.1|FL241381
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211422861|gb|FL241389.1|FL241389
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|74244706|gb|DT652620.1|DT652620
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|60351779|gb|DN218752.1|DN218752
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|87156058|gb|DY400847.1|DY400847
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|71427533|gb|DR808583.1|DR808583
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|22715374|gb|BU197729.1|BU197729
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 275

CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCCGTTCTGTGTATGTTGGAAAT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 148

CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCCGTTCTGTGTATGTTGGAAAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 196

CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCCGTTCTGTGTATGTTGGAAAT


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 184

CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCCGTTCTGTGTATGTTGGAAAT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcctatgtgctcacccaccttgcctttttgatgcttgataccttttttgcggtgtgtttaggtttcattattatggttcgatatgctatatac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG