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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCCTGCATCGTCGGCGTCGCCCGCACGCCCATCGGCGCACTTCTCGGGTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacctttcgcgccactcgctcggctccgacgtttttggccgcatcagcaataacccatcaacaaattgccgcaacacgtgtggtccctcccaaatcccag

Basic information

species Zea mays
transcript GRMZM5G860137_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G860137_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g02020.1 (Oryza sativa), 5'ss of exon 1
GATGCCTGCATCGTCGGCGTCGCCCGCACGCCCATCGGCGCACTTCTCGGGTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacctttcgcgccactcgctcggctccgacgtttttggccgcatcagcaataacccatcaacaaattgccgcaacacgtgtggtccctcccaaatcccag
|| | ||||||||| |||||||||||||||||||||||||| || ||||| || || || ||||||||||||||||||||||||||| |||||||||||||||   | ||   | ||  |||  || | |      |  |   || |          |     | |    |  || ||||  |                      
GACGTCTGCATCGTGGGCGTCGCCCGCACGCCCATCGGCGCCCTGCTCGGCTCCCTCTCCTCCCTCCCCGCCACCAAGCTCGGCTCCGTCGCCATCCAGGgta---aactccagtgctcctc--tcagttttcttctcctcttcctctctgaatccgatttggccatgcttccccacaaccag----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211416631|gb|FL428585.1|FL428585
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCCGGCGCTCGTGCAGGAGGGTTTT
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCC-GGCGCTCGTGCAGGAGG-TTTT
EST: gi|211434558|gb|FL418498.1|FL418498
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|71298333|gb|DR785148.1|DR785148
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|89756408|gb|DY686458.1|DY686458
EST:     TCGCTGTCGTCCCTCCCCGCCCACCAAGCTCGGCTCCCTCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAG
genomic: TCGCTGTCGTCCCTCCCCGCC-ACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAG
EST: gi|50337630|gb|CO532756.1|CO532756
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149110543|gb|EE190473.2|EE190473
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|89760643|gb|DY688974.1|DY688974
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|20803192|gb|BQ294242.1|BQ294242
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149071725|gb|EE160115.2|EE160115
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|211456419|gb|FL396787.1|FL396787
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|93281948|gb|EB674212.1|EB674212
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149000558|gb|EE037748.2|EE037748
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|211023121|gb|FL428611.1|FL428611
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|211245222|gb|FL396978.1|FL396978
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|211024306|gb|FL368563.1|FL368563
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149029957|gb|EE286286.2|EE286286
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|37419864|gb|CF647618.1|CF647618
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|211136636|gb|FL389507.1|FL389507
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|76914731|gb|DV165656.1|DV165656
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149087112|gb|EE176651.2|EE176651
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|74232957|gb|DT640871.1|DT640871
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|71426143|gb|DR807193.1|DR807193
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|211199171|gb|FL385134.1|FL385134
EST:     GNCGCTGNCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGG
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGG
EST: gi|78087866|gb|DV516259.1|DV516259
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|78078473|gb|DV506886.1|DV506886
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|89248149|gb|DY619935.1|DY619935
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|148947617|gb|EC893097.2|EC893097
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|148939632|gb|EC884275.2|EC884275
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149084568|gb|EE174037.2|EE174037
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|91051495|gb|EB161913.1|EB161913
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149083757|gb|EE173120.2|EE173120
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|211111975|gb|FL386052.1|FL386052
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|78085615|gb|DV514008.1|DV514008
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|71442414|gb|DR823464.1|DR823464
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|93016086|gb|EB641606.1|EB641606
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|211164630|gb|FL401351.1|FL401351
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|89248499|gb|DY620285.1|DY620285
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|71439486|gb|DR820536.1|DR820536
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|211403233|gb|FL400076.1|FL400076
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCATGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 44 (upstream exon), 45 (downstream exon)
Score: 18

GATGCCTGCATCGTCGGCGTCGCCCGCACGCCCATCGGCGCACTTCTCGGGTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCATGGGCAACGTCCTCAGCGCCAACCTTGGCCAGGCTCCGGCAAGGCAGGC


Block sizes: 48 (upstream exon), 46 (downstream exon)
Score: 92

GATGCCTGCATCGTCGGCGTCGCCCGCACGCCCATCGGCGCACTTCTCGGGTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCATGGGCAACGTCCTCAGCGCCAACCTTGGCCAGGCTCCGGCAAGGCAGGC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 23

GATGCCTGCATCGTCGGCGTCGCCCGCACGCCCATCGGCGCACTTCTCGGGTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCATGGGCAACGTCCTCAGCGCCAACCTTGGCCAGGCTCCGGCAAGGCAGGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 23

GATGCCTGCATCGTCGGCGTCGCCCGCACGCCCATCGGCGCACTTCTCGGGTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCATGGGCAACGTCCTCAGCGCCAACCTTGGCCAGGCTCCGGCAAGGCAGGC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGCCTGCATCGTCGGCGTCGCCCGCACGCCCATCGGCGCACTTCTCGGGTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacctttcgcgccactcgctcggctccgacgtttttggccgcatcagcaataacccatcaacaaattgccgcaacacgtgtggtccctcccaaatcccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT