Sequence
atgc intronic sequence ATGC exonic sequenceAAGGTGTAGAGGCATCGCTAGTGCAGCTTCTTGAGACAGGCTTGTTGCATGCTGATCCTCATCCTGGTAACTTGCGTTATACTCCTGAAGGCCGTGTTGGgtaagctctactccaaataaattctaaacatgattttacatgctctatagtctatacttccatagttgccttttgtgtttccctaattcagatttcatgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G855200_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g56200.2 (Oryza sativa), 5'ss of exon 9
AAGGTGTAGAGGCATCGCTAGTGCAGCTTCTTGAGACAGGCTTGTTGCATGCTGATCCTCATCCTGGTAACTTGCGTTATACTCCTGAAGGCCGTGTTGGgtaagctcta--------ctccaaataaattctaaacatgattttacatgctctatagtctatacttccatagt------tgccttttgtgtttccctaattcagatttcatgt--------------------------------------------
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AAGGTGTCGAAGCATCATTAGTGCAGCTCCTCGAGACTGGTTTGTTGCATGCTGATCCTCATCCTGGGAATTTGCGTTATACACCTGAAGGTCGTGTCGGgttagtgttaatttatctttttatgtacgctctataagaaaatgtcttcttactataatcagcagaatcatgttatacagtgggtctgatgtttttgtaatggttttcctctgtcattctccctttgagcaatagtaacaccttcctaattatgttag
upper sequence: GRMZM5G855200_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA20G31940.1 (Glycine max), 5'ss of exon 9
AAGGTGTAGAGGCATCGCTAGTGCAGCTTCTTGAGACAGGCTTGTTGCATGCTGATCCTCATCCTGGTAACTTGCGTTATACTCCTGAAGGCCGTGTTGGgtaagctctactccaa----ataaattctaaacatgattttacatgctctatagtctatacttccatagttgccttttgtgtttccctaattcagatttcatgt
|||| || || || | | || ||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||| | ||| | | ||||| | ||| || ||||| || | ||| | | | || | | | || | | || | ||| | | | |
AAGGCGTTGAATCAACATTGGTCCAGCTTCTTGAAACAGGCTTATTACATGCTGATCCACATCCTGGTAACTTGCGTTACACTTCCTCAGGACAAATAGGgtatttctttttccttccctatccattctgaata-aattatgatttcccttcatcacaaaaatctaagaattttttacttctttgtatgtgtgacag-------
upper sequence: GRMZM5G855200_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA10G35610.1 (Glycine max), 5'ss of exon 9
AAGGTGTAGAGGCATCGCTAGTGCAGCTTCTTGAGACAGGCTTGTTGCATGCTGATCCTCATCCTGGTAACTTGCGTTATACTCCTGAAGGCCGTGTTGGgtaagctctactccaa----ataaattctaaacatgattttacatgctctatagtctatacttccatagttgccttttgtgtttccctaattcagatttcatgt
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AAGGCATTGAATCAACATTGGTGCAACTTCTTGAAACAGGCTTATTACATGCTGATCCACATCCTGGTAACTTGCGTTACACTTCCTCAGGACAAATAGGgtatttctttttccttccctattcattctgaata-aattatggtttcccttcatcacaaaaatctaaaa--gaattttttcacttctttgtatgtgtgacag--
upper sequence: GRMZM5G855200_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv13s0019g04130.t01 (Vitis vinifera), 5'ss of exon 9
AAGGTGTAGAGGCATCGCTAGTGCAGCTTCTTGAGACAGGCTTGTTGCATGCTGATCCTCATCCTGGTAACTTGCGTTATACTCCTGAAGGCCGTGTTGGgtaagctct---actccaaataaattctaaacatgattttacatgctctatagtctatacttccatagttgccttttgtgtttccctaattcagat-ttcatgt--------------------------------
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AAGGAGTGGAGGCATCCCTAGTTCAACTCCTTGATACAGGCTTATTGCATGCTGATCCGCATCCTGGAAATTTGCGTTACATGCCTTCAGGGCAAATTGGgtaaatcatttgattctttttctttattgtacaaaactatgt-ttctctatgctaaatgtggttattgtttgttgtcaaaatatattggaaaatctgtttatgacactctcacctttgctagtgattttgttctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33467317|gb|CF244366.1|CF244366EST: GCTGATCCTCATCCTGGTAACTTGCGTTATACTCCTGAAGGCCGTGTTGG GTTTCTAGATTTTGGTTTGCTGTGCATGATGGAGAGGAAACATCAGCGTGC
genomic: GCTGATCCTCATCCTGGTAACTTGCGTTATACTCCTGAAGGCCGTGTTGGgtaagctcta ... aatacatcagGTTTCTAGATTTTGGTTTGCTGTGCATGATGGAGAGGAAACATCAGCGTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGGTGTAGAGGCATCGCTAGTGCAGCTTCTTGAGACAGGCTTGTTGCATGCTGATCCTCATCCTGGTAACTTGCGTTATACTCCTGAAGGCCGTGTTGGgtaagctctactccaaataaattctaaacatgattttacatgctctatagtctatacttccatagttgccttttgtgtttccctaattcagatttcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG