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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCAGGGAGGAAGGGGTTGCCGCGCTCTGGAAGGGCGTCATCCCCGGCCTCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactcctccacattctttcacctgtctcctcctcctccgattcaaagtgactttctcacaacaataaaggggaatttccccttctatatacttgcag

Basic information

species Zea mays
transcript GRMZM5G852877_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G852877_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g74640.3 (Oryza sativa), 5'ss of exon 2
CGCCAGGGAGGAAGGGGTTGCCGCGCTCTGGAAGGGCGTCATCCCCGGCCTCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtct----gtactcctccac--------------attctttcacctgtctcctcctcctccgatt--caaagtgactttctcacaacaataaaggggaatttccccttctatatacttgcag
||| |||||||||||||| |||||||| ||||| ||| ||||||| ||||| ||||| |||| | |||||||||| |||||||||| ||||||||||||||||     || |||||   |              | | |||||  |   |  || || | |   |  |||||  ||||  |  |||||  |      ||||  ||| ||  ||  |||||||
CGCAAGGGAGGAAGGGGTGGCCGCGCTTTGGAACGGCATCATCCCTGGCCTTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTgtcagttagtgctcctttccttctgtttcatactactatttcatatacattttcttctttcttctgtcaaagc-acttcatgtcaacaccatt----aattatcccctccttac-cttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89762468|gb|DY690033.1|DY690033
EST:     TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT                         GTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
EST: gi|78084604|gb|DV512997.1|DV512997
EST:     TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT                         GTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
EST: gi|84980856|gb|DW531205.1|DW531205
EST:     TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT                         GTGAAGGCTTTCTTCGTCGGAGGTGCTGTTGTGGGTGATGTCAGTTTACTA
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
EST: gi|93017382|gb|EB642902.1|EB642902
EST:     TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT                         GTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
EST: gi|60354253|gb|DN221226.1|DN221226
EST:     TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT                         GTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
EST: gi|60401298|gb|DN234105.1|DN234105
EST:     TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT                         GTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA