1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttcgacattccctatttgctctgtatttttgtctcttagatccatgtgagtggtgttctctcagatgctcttcgtagctgttgttaagacgat...
species | Zea mays |
transcript | GRMZM5G851698_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|76923081|gb|DV169325.1|DV169325
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|211068384|gb|FL392622.1|FL392622
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAA-GATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|211542573|gb|FL410011.1|FL410011
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATAGACCGAA-GATCTCCCAGGAGGTCAGTGGTGATGCTCEST: gi|15312778|gb|BI478369.1|BI478369
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTAT-GACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTC
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|211431422|gb|FL393492.1|FL393492
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAG-ATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|20300566|gb|BQ163509.1|BQ163509
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGATGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|78079211|gb|DV507623.1|DV507623
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|5081006|gb|AI738268.1|AI738268
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT GCGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|148969224|gb|EE019976.2|EE019976
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|67016348|gb|CO445097.1|CO445097
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT GCGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|78024666|gb|DV493053.1|DV493053
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT GCGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|29946749|gb|CB816306.1|CB816306
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|19058404|gb|BM737071.1|BM737071
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|21987949|gb|BQ779477.1|BQ779477
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT GCGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|22819122|gb|BU499212.1|BU499212
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT GCGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|15632345|gb|BI679438.1|BI679438
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|148966135|gb|EE017078.2|EE017078
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|71428551|gb|DR809601.1|DR809601
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|19057795|gb|BM736462.1|BM736462
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|148955068|gb|EC900579.2|EC900579
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|78075296|gb|DV503730.1|DV503730
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: GAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|20300275|gb|BQ163218.1|BQ163218
genomic: GAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|78088886|gb|DV517279.1|DV517279
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|93284111|gb|EB676375.1|EB676375
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|31406383|gb|CD485115.1|CD485115
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|67010291|gb|CO439040.1|CO439040
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT GCGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|18654801|gb|BM499606.1|BM499606
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|31998590|gb|CD662145.1|CD662145
genomic: CTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCG-CTACCGGGTGCCAGAA-AAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|22935788|gb|BU572063.1|BU572063
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT GCGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttcgacattccctatttgctctgtatttttgtctcttagatccatgtgagtggtgttctctcagatgctcttcgtagctgttgttaagacgat
- - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - GCTGGA