Sequence
atgc intronic sequence ATGC exonic sequenceTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttcgacattccctatttgctctgtatttttgtctcttagatccatgtgagtggtgttctctcagatgctcttcgtagctgttgttaagacgat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 2
TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttcgacattccctatttgctctgtatttt-tgtctcttagatccatgtgagtggtgttctctcagatgctcttcgtagctgttgttaagacgat--
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TTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTgtgagtattct-cgccgccgctcccccgtttgtttcgtttccccaatattagagagagtggtgttggt--agtggcaagccgaatcagcgcgaacccttgtgt
upper sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA13G24630.1 (Glycine max), 5'ss of exon 2
TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttcgacattccctatttgctctgtatttttgtctcttagatccatgtgagtggtgttct-ctcagatgctct-tcgtagctgttgttaagacgat
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TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcactttctctgcaattttcatttgtattactcttctgattgtgtgtcgtgtgttgtgcttagaggaaaaaccgttgctttt--taagtgggg
upper sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA07G31840.2 (Glycine max), 5'ss of exon 2
TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttcgacattccctatttgctctgtatttttgtc--tcttagatccatgtgagtggtgttct-ctcagatgctcttcgtagctgttgttaagacgat--
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TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt--cactctctcttcaattttcatttgtatcactcttctgatcgcgtgtcttgtgttgtgcttagaagaaa--aatcgttact-ttaaagcgggga
upper sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 2
TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttcgacattccctatttgctctgtatttttgtctcttagatccatgtgagtggtgtt--ctctcagatgctcttcgtagctgttgttaagacgat
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TTCAATATTGCGAATCCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACTgtaagaaatttctttgaatttgattttattcagttgttggcattaaatatattttcgtgttattatctcttgtttaaaatttgtaatgtacgttattatc--
upper sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S253_38V6.1 (Physcomitrella patens), 5'ss of exon 2
TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttcgacattccctatttgctctgtatttttgtctcttagatccatgtgagtggtgttctctcagatgctcttcgtagctgttgttaagacgat--
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CTCAACATCGCCAACCCCACTACGGGGTGCCAGAAGAAGGTTGAGATCGATGACGACGCTAAGCTgtaagtggct--tggttctttgcgaccctttgcagtctgtcggtggatgttcgcctgcaattttacgtgctctcttgttcgcgcctgcgttttgcactgcttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211523895|gb|FL150679.1|FL150679EST: YCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT ACGTGCCTTTTATGACCGAA-GATCTCCCAGGAGGTCAGTGGTGATGCTCT
genomic: CCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttc ... tcaactatagACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttcgacattccctatttgctctgtatttttgtctcttagatccatgtgagtggtgttctctcagatgctcttcgtagctgttgttaagacgat
- - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - GCTGGA