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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctgtgcagtaatccgctctcgctcctctgatttcttatgttagtattttgctgttgctaggtagcagagatatgaaacggcattatgtcgtct...

Basic information

species Zea mays
transcript GRMZM5G850355_T05
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G850355_T05 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g42320.3 (Oryza sativa), 5'ss of exon 1
-----------------------CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctgtgcagtaatccgctctcgctcctctgatttcttatgttagtattttgctgttgctaggtagca-gagatatgaaacggcattatgtcgtct-
                       ||||||||| ||||| |||||||| |||||||||||||| || ||||||||||| ||||| ||||| |||||||||||| ||  | ||| || |||||  ||||  | ||   ||| | | | | || ||   |  |  |   ||  |   ||||| |     ||     | ||   | 
TTTTGTGGCGATTTCGTTTGCAGCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAGgtgcgtcccgtgaagcaatcccttctctatacttctattgcgt-tatgagaatcgagaaggggaggggaggtttgagattttggctggttcggt-tcacatg

upper sequence: GRMZM5G850355_T05 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g42320.4 (Oryza sativa), 5'ss of exon 2
CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctgtgcagtaatccgctctcgctcctctgatttcttatgttagtattttgctgttgctaggtagca-gagatatgaaacggcattatgtcgtct-
||||||||| ||||| |||||||| |||||||||||||| || ||||||||||| ||||| ||||| |||||||||||| ||  | ||| || |||||  ||||  | ||   ||| | | | | || ||   |  |  |   ||  |   ||||| |     ||     | ||   | 
CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAGgtgcgtcccgtgaagcaatcccttctctatacttctattgcgt-tatgagaatcgagaaggggaggggaggtttgagattttggctggttcggt-tcacatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14203539|gb|BG837216.1|BG837216
EST:     CCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
genomic: CCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|15427202|gb|BI543024.1|BI543024
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|32934694|gb|CF039506.1|CF039506
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|211017640|gb|FL189740.1|FL189740
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|22520740|gb|BU079551.1|BU079551
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGGGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|5566889|gb|AI881800.1|AI881800
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGGGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|87156656|gb|DY401445.1|DY401445
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGGGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|14242859|gb|BG840665.2|BG840665
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACTGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|211014870|gb|FL189739.1|FL189739
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAAGAAACTGCCTTCCTATTTT
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAA-GAAACTGCCTTC-TATTTT
EST: gi|211535545|gb|FL366410.1|FL366410
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|32908069|gb|CF012882.1|CF012882
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|9254141|gb|BE344609.1|BE344609
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|211408164|gb|FL390201.1|FL390201
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|9461620|gb|BE453822.1|BE453822
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|211156517|gb|FL164231.1|FL164231
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|14204267|gb|BG837944.1|BG837944
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACTGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|5456374|gb|AI834064.1|AI834064
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGGGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|29167732|gb|CB410992.1|CB410992
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACTGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|211017651|gb|FL189751.1|FL189751
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGT
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGT
EST: gi|8367928|gb|BE050873.1|BE050873
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAATGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|12967998|gb|BG264945.1|BG264945
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACTGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|211158124|gb|FL164253.1|FL164253
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|211370171|gb|FL333604.1|FL333604
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|32912475|gb|CF017287.1|CF017287
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|40337252|gb|CK371322.1|CK371322
EST:     GGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
genomic: GGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|211100498|gb|FL307608.1|FL307608
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|26559204|gb|CA831439.1|CA831439
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGGGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|211352174|gb|FL343457.1|FL343457
EST:     GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|31355634|gb|CD439991.1|CD439991
EST:     GGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAATGGTGTATTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
genomic: GGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: gi|32906923|gb|CF011736.1|CF011736
EST:     GCACGCGCTCACTGTTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG                         CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG