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GATAACAAAGGCTGGAATAAGAACCTTTTGAAATGGGCTTCTAGTCTTATCACTGGTGATGCTTCATCAAAAAGTAAAGCTGATAAAACCACTgtaagtaatcctactttagtacttttagctaagttcatcttactacatatactgtaaacagggcatataacagcaaaactaggtactccctctgttcttt...
species | Zea mays |
transcript | GRMZM5G846198_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCTTATCACTGGTGATGCTTCATCAAAAAGTAAAGCTGATAAAACCACT GACCGTAAGGATGCAAGACAAGGGGAGACCATAAATATATTCTCTGTTGCTEST: gi|32850563|gb|CD990244.1|CD990244
genomic: GTCTTATCACTGGTGATGCTTCATCAAAAAGTAAAGCTGATAAAACCACTgtaagtaatc ... ctttattcagGACCGTAAGGATGCAAGACAAGGGGAAACCATAAATATATTCTCTGTTGCT
EST: AAAGTAAAGTTAATAAACCCACT GACCGTAAGAATGCAAGACAAGGGGAGACCATAAATATATTCCCTGTTGCTEST: gi|32835266|gb|CD974944.1|CD974944
genomic: AAAGTAAAGCTGATAAAACCACTgtaagtaatc ... ctttattcagGACCGTAAGGATGCAAGACAAGGGGAAACCATAAATATATTCTCTGTTGCT
EST: ATCACTGGTGATGCTTCATCAAAAAGTAAAGCTGATAAAACCACT GACCGTAAGGATGCAAGACAAGGGGAGACCATAAATATATTCTCTGTTGCTEST: gi|32850558|gb|CD990239.1|CD990239
genomic: ATCACTGGTGATGCTTCATCAAAAAGTAAAGCTGATAAAACCACTgtaagtaatc ... ctttattcagGACCGTAAGGATGCAAGACAAGGGGAAACCATAAATATATTCTCTGTTGCT
EST: TCAAAAAGTAAAGCTGATAAAACCCCT GACCGTAAGGATGCAAGCCAAGGGGAGACCATAAATATATTCCCTGTTGCCEST: gi|32932543|gb|CF037355.1|CF037355
genomic: TCAAAAAGTAAAGCTGATAAAACCACTgtaagtaatc ... ctttattcagGACCGTAAGGATGCAAGACAAGGGGAAACCATAAATATATTCTCTGTTGCT
EST: GTCTTATCACTGGTGATGCTTCATCAAAAAGTAAAGCTGATAAAACCACT GACCGTAAGGATGCAAGACAAGGGGAGACCATAAATATATTCTCTGTTGCTEST: gi|32850631|gb|CD990312.1|CD990312
genomic: GTCTTATCACTGGTGATGCTTCATCAAAAAGTAAAGCTGATAAAACCACTgtaagtaatc ... ctttattcagGACCGTAAGGATGCAAGACAAGGGGAAACCATAAATATATTCTCTGTTGCT
EST: AAAAGTAAAGCTGATAAAACCACT GACCGTAAGGATGCAAGCCAAGGGGAGACCATAAATATATTCCCTGTTGCTEST: gi|9743043|gb|BE519191.1|BE519191
genomic: AAAAGTAAAGCTGATAAAACCACTgtaagtaatc ... ctttattcagGACCGTAAGGATGCAAGACAAGGGGAAACCATAAATATATTCTCTGTTGCT
EST: GTCTTATCACTGGTGATGCTTCATCAAAAAGTAAAGCTGATAAAACCACT GACCGTAAGGATGCAAGACAAGGGGAGACCATAAATATATTCTCTGTTGCT
genomic: GTCTTATCACTGGTGATGCTTCATCAAAAAGTAAAGCTGATAAAACCACTgtaagtaatc ... ctttattcagGACCGTAAGGATGCAAGACAAGGGGAAACCATAAATATATTCTCTGTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAACAAAGGCTGGAATAAGAACCTTTTGAAATGGGCTTCTAGTCTTATCACTGGTGATGCTTCATCAAAAAGTAAAGCTGATAAAACCACTgtaagtaatcctactttagtacttttagctaagttcatcttactacatatactgtaaacagggcatataacagcaaaactaggtactccctctgttcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT