1 5' 3' | 2 5' 3' | 3 5' 3' |
ACTTTGAAGTCCTGTGCAATTTCCCTGACGAGCCTCTGGAAGGGCAGCTTCCTGATCAGCAGCTCAGTGCTCTTCTGATACTTGCGGATCTCACTGataaattacattcatgtcagtagtgcagcataacagcatattcaacggaagaatccaatgatgttctactcaccgg
species | Zea mays |
transcript | GRMZM5G842143_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTTCCTGATCAGCAGCTCAGTGCTCTTCTGATACTTGCGGATCTCACGG AGGGCAACAGTTCCAGGGCGGTAGCGGTGAGGCTTCTTCACTCCACCAGTGEST: gi|211222172|gb|FL084350.1|FL084350
genomic: GCTTCCTGATCAGCAGCTCAGTGCTCTTCTGATACTTGCGGATCTCACTGataaattaca ... tactcaccggAGGGCAACAGTTCCAGGGCGGTAGCGGTGAGGCTTCTTCACTCCACCAGTG
EST: CCTGATCAGCAGCTCAGTGCTCTTCTGATACTTGCGGATCTCACGG AGGGCAACAGTTCCAGGGCGGTAGCGGTGAEST: gi|18648942|gb|BM497761.1|BM497761
genomic: CCTGATCAGCAGCTCAGTGCTCTTCTGATACTTGCGGATCTCACTGataaattaca ... tactcaccggAGGGCAACAGTTCCAGGGCGGTAGCGGTGA
EST: GCTTCCTGATCAGCAGCTCAGTGCTCTTCTGATACTTGCGGATCTCACGG AGGGCAACAGTTCCAGGGCGGTAGCGGTGAGGCTTCTTCACTCC-CCAGTGEST: gi|211220102|gb|FL084336.1|FL084336
genomic: GCTTCCTGATCAGCAGCTCAGTGCTCTTCTGATACTTGCGGATCTCACTGataaattaca ... tactcaccggAGGGCAACAGTTCCAGGGCGGTAGCGGTGAGGCTTCTTCACTCCACCAGTG
EST: GCTTCCTGATCAGCAGCTCAGTGCTCTTCTGATACTTGCGGATCTCACGG AGGGCAACAGTTCCAGGGCGGTAGCGGTGAGGCTTCTTCACTC-ACCAGTG
genomic: GCTTCCTGATCAGCAGCTCAGTGCTCTTCTGATACTTGCGGATCTCACTGataaattaca ... tactcaccggAGGGCAACAGTTCCAGGGCGGTAGCGGTGAGGCTTCTTCACTCCACCAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTTGAAGTCCTGTGCAATTTCCCTGACGAGCCTCTGGAAGGGCAGCTTCCTGATCAGCAGCTCAGTGCTCTTCTGATACTTGCGGATCTCACTGataaattacattcatgtcagtagtgcagcataacagcatattcaacggaagaatccaatgatgttctactcaccgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA