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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGGAGTCCAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtgacattgttgcttcctcgtccactaaactctatattgtcttgtccccatttcatcgcatgcatggcattcaagattcaactaatacaacctatgcattcctgtacacactgttattccttactgtgaaaaaggacttgcttatttgagctttggtttatcaaacag

Basic information

species Zea mays
transcript GRMZM5G840909_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G840909_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g61810.1 (Oryza sativa), 5'ss of exon 2
TTGTGGAGTCCAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtgacattgttgcttcctcgtccactaaactctatattgtcttgtccccatttcatcgcatgcatggcattcaagattcaactaatacaacctatgcattcctgtacacactgttattccttactgtgaaaaaggacttgcttatttgagctttggtttatcaaacag
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||               || | | |  || || |   |  |    || | |  ||| ||   ||  | |          | |||| | ||   |  | | |  | ||         ||||| ||| |   ||  ||||||| | ||||| |  || ||||||
TTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtattatt---------------accagatttgatcttat---ggacatgattgacca-atgaatattatatatg----------tccaacatctgttattttctgctgattggagg-----actgttaaaca---ctcacttatttaatctttgatgcattaaacag

upper sequence: GRMZM5G840909_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA20G37210.1 (Glycine max), 5'ss of exon 2
TTGTGGAGTCCAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtgacattgttgcttcctcgtccactaaactctatattgtcttgtccccatttcatcgcatgcatggcattcaagattcaactaatacaacctatgcattcctgtacacactgttattccttactgtgaaaaaggacttgcttatttgagctttggtttatcaaacag
|  ||||  |||| || || || || || ||||||||||||||| |||||||||| ||||||   ||  |   |      | |  |    |||  |        ||||   ||  |  ||  | |    |||     ||   | |||| |                                                                              
TATTGGAAGCCAAAGATGGTACTATTTCTGTTGCTTCAGCATTTCCTGGTCATCAAGAAGgtatgataataattgatcatttctgtttcatctgcaacccaccctcccacatttttttcaaacgttattttc-----tcttgttataccag-----------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74244654|gb|DT652568.1|DT652568
EST:     CAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG                         CTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT
genomic: CAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtgacattgt ... tatcaaacagCTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT
EST: gi|211533256|gb|FL397681.1|FL397681
EST:     CAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG                         CTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT
genomic: CAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtgacattgt ... tatcaaacagCTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT
EST: gi|211111076|gb|FL388624.1|FL388624
EST:     CAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG                         CTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT
genomic: CAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtgacattgt ... tatcaaacagCTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT
EST: gi|93012688|gb|EB638208.1|EB638208
EST:     CAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG                         CTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT
genomic: CAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtgacattgt ... tatcaaacagCTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT
EST: gi|211194115|gb|FL380863.1|FL380863
EST:     CAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG                         CTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT
genomic: CAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtgacattgt ... tatcaaacagCTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT
EST: gi|94474369|gb|EB703327.1|EB703327
EST:     CAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG                         CTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT
genomic: CAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtgacattgt ... tatcaaacagCTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT
EST: gi|89252884|gb|DY624670.1|DY624670
EST:     CAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG                         CTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT
genomic: CAAGGACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtgacattgt ... tatcaaacagCTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT
EST: gi|211162917|gb|FL392799.1|FL392799
EST:     AAGGCACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG                         CTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT
genomic: AAGG-ACGGGACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtgacattgt ... tatcaaacagCTGTGCAAGACAGGGACCACAAATTTTTATCAAAGGCAGTGGAGGAAGCAT