1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAATGGCAACAATTAGAGGAGGCTGTTCAACATGACTTTGTTCCTGGATTTGGGAAGAAGATCAGCAGCCTTCTTGATAGATGTTTATCAGAgtaagttttttggatgtcttatgattactctgttatctttctggtcataggatccccttgatttagatgatgtttttagacttgttacaagtctattcaa...
species | Zea mays |
transcript | GRMZM5G838579_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTGGATTTGGGAAGAAGATCAGCAGCCTTCTTGATAGATGTTTATCAGA GTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAAGCTCTAAACGEST: gi|32941836|gb|CF046655.1|CF046655
genomic: CCTGGATTTGGGAAGAAGATCAGCAGCCTTCTTGATAGATGTTTATCAGAgtaagttttt ... ttggtcacagGTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAAGCTCTAAACG
EST: CCTGGATTTGGGAAGAAGATCAGCAGCCTTCTTGATAGATGTTTATCAGA GTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAAGCTCTAAACGEST: gi|87151650|gb|DY396439.1|DY396439
genomic: CCTGGATTTGGGAAGAAGATCAGCAGCCTTCTTGATAGATGTTTATCAGAgtaagttttt ... ttggtcacagGTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAAGCTCTAAACG
EST: CCTGGATTTGGGAAGAAGATCAGCAGCCTTCTTGATAGATGTTTATCAGA GTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAAGCTCTAAACG
genomic: CCTGGATTTGGGAAGAAGATCAGCAGCCTTCTTGATAGATGTTTATCAGAgtaagttttt ... ttggtcacagGTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAAGCTCTAAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGGCAACAATTAGAGGAGGCTGTTCAACATGACTTTGTTCCTGGATTTGGGAAGAAGATCAGCAGCCTTCTTGATAGATGTTTATCAGAgtaagttttttggatgtcttatgattactctgttatctttctggtcataggatccccttgatttagatgatgtttttagacttgttacaagtctattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA