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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCACCTCCACGGGAAAGGGCTGCCGGTGATGGGCTGGGCGACGCGGCTGCGCATCGCGCTCGGCGCCGCCAAGGGGCTCGCCTACCTGCACGAGGAATgtaagagctagcgattcaggttgatctcagagtccgttgatgaactgcaatgtgatgaacgccatgcatatgcatcag

Basic information

species Zea mays
transcript GRMZM5G836990_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G836990_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g04520.1 (Oryza sativa), 5'ss of exon 3
CATCACCTCCACGGGAAAGGGCTGCCGGTGATGGGCTGGGCGACGCGGCTGCGCATCGCGCTCGGCGCCGCCAAGGGGCTCGCCTACCTGCACGAGGAATgtaa---gagctagcgattcaggttgatctcagagtccgttgatgaac----tgcaat--gtgatgaacgccatgcatatgcatcag-----
               || ||| | |||||||||   ||| ||||| || ||||||||||| ||||  | || ||||||||||||||||||||||||||||||||   || ||    |||  | |   | |||  |  |  || ||       | || |  ||||| | | || |   | |            
-------------AAAAGGGGTTACCGGTGATGAAGTGGACGACGAGGTTGCGCATCGCGGTCGGATCAGCAAAGGGGCTCGCCTACCTGCACGAGGAATgtaagttgaactccgaattttgatcagt-tcatcgatcaatggtggctttggttcagtctgtgataatctcctttttttttttctgttgaag