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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAGGAGCAGAAGAAGCTGGACGTCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatatccctccttgtccacctgcgattattgtccgtttgagttccgagagtgttctgctttctgactcggcgcccgccgcggtgtgcag

Basic information

species Zea mays
transcript GRMZM5G836250_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G836250_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g64660.4 (Oryza sativa), 5'ss of exon 2
-------------------------GGAGAGGAGCAGAAGAAGCTGGACGTCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatatccctccttgtccacctgcgattattgtccgtttgagttccgagagtgttctgc-tttctgactcggcgcccgccgcggtgtgcag
                         |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||    |   ||| ||| | |   |  |||     | |  | || ||| ||  ||    ||| ||  |   | |  ||    | ||||||
CTGAGGACTTGCTTGGTGTGACCAGGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACCgtacgaactcactctcttctcccctta-aaccatt-----tctttgctcagagtgttctcaatatttatggtttttcact-gcgatcgcgtgcag

upper sequence: GRMZM5G836250_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g64660.3 (Oryza sativa), 5'ss of exon 2
GGAGAGGAGCAGAAGAAGCTGGACGTCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatatccctccttgtccacctgcgattattgtccgtttgagttccgagagtgttctgc-tttctgactcggcgcccgccgcggtgtgcag
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||    |   ||| ||| | |   |  |||     | |  | || ||| ||  ||    ||| ||  |   | |  ||    | ||||||
GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACCgtacgaactcactctcttctcccctta-aaccatt-----tctttgctcagagtgttctcaatatttatggtttttcact-gcgatcgcgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91877968|gb|EB407925.1|EB407925
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|149064613|gb|EE286484.2|EE286484
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|149085230|gb|EE174737.2|EE174737
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|149056940|gb|EE156494.2|EE156494
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|33466970|gb|CF244019.1|CF244019
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|78106830|gb|DV525248.1|DV525248
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGNCA-CGTTCGTGGACCCTAA
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAG-CAACGTTCGTGGACCCTAA
EST: gi|148938587|gb|EC882914.2|EC882914
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         C
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcag-
EST: gi|148938587|gb|EC882914.2|EC882914
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         C
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcag-
EST: gi|50327741|gb|CO522867.1|CO522867
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|89759142|gb|DY688055.1|DY688055
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|211007786|gb|FL012051.1|FL012051
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|149088446|gb|EE177549.2|EE177549
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|71314865|gb|DR794058.1|DR794058
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|149095912|gb|EE181574.2|EE181574
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|148983226|gb|EE029190.2|EE029190
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|71768089|gb|DR966026.1|DR966026
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|71770843|gb|DR968780.1|DR968780
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|148932776|gb|EE285437.2|EE285437
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|71317308|gb|DR795339.1|DR795339
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|211005021|gb|FL012048.1|FL012048
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|94476279|gb|EB705237.1|EB705237
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|91055488|gb|EB165906.1|EB165906
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|91877810|gb|EB407767.1|EB407767
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|149040104|gb|EE046754.2|EE046754
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|76282215|gb|DV021783.1|DV021783
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|74244032|gb|DT651946.1|DT651946
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|93284535|gb|EB676799.1|EB676799
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGATGAAGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|71438223|gb|DR819273.1|DR819273
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|78105897|gb|DV524315.1|DV524315
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: gi|71757120|gb|DR955057.1|DR955057
EST:     TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC                         TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG