1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgttttcacagaagcagccctcctggatcctgattccaccatcaactattcaactggcgcgctatagttatctagatgactatgatagacacag...
species | Zea mays |
transcript | GRMZM5G834205_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|50325447|gb|CO520573.1|CO520573
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|93017403|gb|EB642923.1|EB642923
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|50339160|gb|CO534286.1|CO534286
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|71761883|gb|DR959820.1|DR959820
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|50325060|gb|CO520186.1|CO520186
genomic: AGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|71320277|gb|DR796887.1|DR796887
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCCATAGGCAEST: gi|148952813|gb|EC898805.2|EC898805
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCC-ATAGGCA
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|37394180|gb|CF634361.1|CF634361
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgttttcacagaagcagccctcctggatcctgattccaccatcaactattcaactggcgcgctatagttatctagatgactatgatagacacag
- - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT