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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTGCGGAAATGGTGAAAGCGGCGACGAGCGACAAGCTCAAGGAGATGGATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgccatcccccctcctgttttttttccctttcggaaccattggttaccgagtagcattgcaacttttgctggctgaagcctgtgacgatgaat...

Basic information

species Zea mays
transcript GRMZM5G834205_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G834205_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g01740.2 (Oryza sativa), 5'ss of exon 2
TGGCTGCGGAAATGGTGAAAGCGGCGACGAGCGACAAGCTCAAGGAGATGGATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgccatcccccctcc------tgtttttt--------ttccctttcggaaccattggtta--ccgagtagcattgcaacttttgctggctgaagcctgtgacgatgaat
||||  |||||||||| || ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| || || || ||||          ||  | ||        || | | ||   |    | ||||  |||  ||||||||||| ||| ||| | ||| |               
TGGCCTCGGAAATGGTTAAGGCGGCGACGAGTGAGAAGCTCAAGGAGATGGATTGGGCCAAGAACATCGAAATCTGCGAGCTCGTCGCTCAGGATCCTGGgtattctcgcgattcccctcttgcatagtgcctcttgactaggttttcatctctagatttctagttatcccgtttagcattgcaagttt-gctagttgagg---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211276227|gb|FL230642.1|FL230642
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|78116689|gb|DV535076.1|DV535076
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|211276228|gb|FL230643.1|FL230643
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|89250673|gb|DY622459.1|DY622459
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|211276231|gb|FL230646.1|FL230646
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|74245588|gb|DT653502.1|DT653502
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|78107222|gb|DV525640.1|DV525640
EST:     ATTGGGCAAAG-ACATCGAAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATA-GGAGCAGGGA
genomic: ATTGGGCAAAGAACATCG-AAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCA-GGA
EST: gi|71421501|gb|DR805467.1|DR805467
EST:     TTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGA
genomic: TTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagG-AAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGA
EST: gi|149083865|gb|EE173240.2|EE173240
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|149079653|gb|EE168650.2|EE168650
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|149088094|gb|EE177262.2|EE177262
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|211276224|gb|FL230639.1|FL230639
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|76291818|gb|DV031386.1|DV031386
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|88752284|gb|DY536425.1|DY536425
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|76281750|gb|DV021318.1|DV021318
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|76924364|gb|DV169917.1|DV169917
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|71326004|gb|DR799684.1|DR799684
EST:     GATTGGGCAAAGACCATCGAAATTTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAGGGATGTGATCTAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|149105966|gb|EE291599.2|EE291599
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|211276230|gb|FL230645.1|FL230645
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|71428014|gb|DR809064.1|DR809064
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|211276222|gb|FL230637.1|FL230637
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|211276225|gb|FL230640.1|FL230640
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|149102742|gb|EE288091.2|EE288091
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|78091791|gb|DV520165.1|DV520165
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|86465690|gb|DY232063.1|DY232063
EST:     GATTGGGCAAAGAACATCAAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|148938287|gb|EC882591.2|EC882591
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCT-TAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|76282168|gb|DV021736.1|DV021736
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|71326005|gb|DR799685.1|DR799685
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|211276226|gb|FL230641.1|FL230641
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|149059924|gb|EE157051.2|EE157051
EST:     GCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|86472431|gb|DY238801.1|DY238801
EST:     GATTGGGCAAAAAACATCAAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|71421504|gb|DR805468.1|DR805468
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|149095623|gb|EE174749.2|EE174749
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: gi|101391434|gb|EB817652.1|EB817652
EST:     GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG                         GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 322

TGGCTGCGGAAATGGTGAAAGCGGCGACGAGCGACAAGCTCAAGGAGATGGATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 170

TGGCTGCGGAAATGGTGAAAGCGGCGACGAGCGACAAGCTCAAGGAGATGGATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 208

TGGCTGCGGAAATGGTGAAAGCGGCGACGAGCGACAAGCTCAAGGAGATGGATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 161

TGGCTGCGGAAATGGTGAAAGCGGCGACGAGCGACAAGCTCAAGGAGATGGATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGCTGCGGAAATGGTGAAAGCGGCGACGAGCGACAAGCTCAAGGAGATGGATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgccatcccccctcctgttttttttccctttcggaaccattggttaccgagtagcattgcaacttttgctggctgaagcctgtgacgatgaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcc