1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgttttcacagaagcagccctcctggatcctgattccaccatcaactattcaactggcgcgctatagttatctagatgactatgatagacacag...
species | Zea mays |
transcript | GRMZM5G834205_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|71421501|gb|DR805467.1|DR805467
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|50325447|gb|CO520573.1|CO520573
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|78107223|gb|DV525641.1|DV525641
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|93017403|gb|EB642923.1|EB642923
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|149059924|gb|EE157051.2|EE157051
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|93015305|gb|EB640825.1|EB640825
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAACTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|149088092|gb|EE287276.2|EE287276
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAA-TGACGGAGAGCCTGTCCATAGGCAGGTEST: gi|9953455|gb|BE640038.1|BE640038
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTG-CGGAGAGCCTGTCCATAGGCAGGT
EST: GCAAGACCACTCAACTCTTTGCTGTTATG CTGTTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|71421504|gb|DR805468.1|DR805468
genomic: GCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|50339160|gb|CO534286.1|CO534286
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|71326005|gb|DR799685.1|DR799685
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|71320277|gb|DR796887.1|DR796887
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCCATAGGCAEST: gi|78107222|gb|DV525640.1|DV525640
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCC-ATAGGCA
EST: GAAGTGTATA-GGAGCAGGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|44682243|gb|CK787291.1|CK787291
genomic: GAAGTGTATAGGGAGCA-GGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|148952813|gb|EC898805.2|EC898805
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|74245587|gb|DT653501.1|DT653501
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|149105965|gb|EE291598.2|EE291598
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCEST: gi|71428013|gb|DR809063.1|DR809063
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
EST: GAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTC-TTGCTTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTEST: gi|71326004|gb|DR799684.1|DR799684
genomic: GAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGC-TGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGT
EST: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG CTATTAGAGATGCTTCTGAATATTTGCGGAGAGCCTGTCCATAGGCAGGTC
genomic: AGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgtt ... tttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATGgtgagttgttttcacagaagcagccctcctggatcctgattccaccatcaactattcaactggcgcgctatagttatctagatgactatgatagacacag
- - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT