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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGAGTTTCTGAATGGCCAGCCCAGGGGATGCGGAGGGCATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacgaaatagcccagtatgatgcatgtctcttatccctgacaagggggcaaccatgtgcgcttccgtagccatgcgttgcttgcttaattattagcactgcttgtagttttatctcatgttggaacctagttggtttacttatgcaaaactttgtcccag

Basic information

species Zea mays
transcript GRMZM5G833593_T05
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50334984|gb|CO530110.1|CO530110
EST:     CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
EST: gi|71443400|gb|DR824450.1|DR824450
EST:     CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
EST: gi|71327087|gb|DR800190.1|DR800190
EST:     CCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
genomic: CCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
EST: gi|211215261|gb|FL300696.1|FL300696
EST:     CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
EST: gi|71448668|gb|DR829718.1|DR829718
EST:     CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
EST: gi|18661073|gb|BM501196.1|BM501196
EST:     ATCACCATCTCCATGGGGGAAGCTGAGCGTAGAAGCAG-GACTTCGTCAG                         CTAACGGCGGTG-TGATGTTGCCGCTGTC
genomic: ATCACCATCTCCATGGGGGA-GCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTC
EST: gi|211215255|gb|FL300690.1|FL300690
EST:     CATCACCATNTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTG
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTG
EST: gi|211215256|gb|FL300691.1|FL300691
EST:     CATCACCAYNTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATG
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATG
EST: gi|76929776|gb|DV172157.1|DV172157
EST:     CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
EST: gi|89253099|gb|DY624885.1|DY624885
EST:     CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
EST: gi|211215260|gb|FL300695.1|FL300695
EST:     CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGGGNTGNAAA
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTG-TGGGAA
EST: gi|76934920|gb|DV174088.1|DV174088
EST:     CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
EST: gi|71771514|gb|DR969451.1|DR969451
EST:     CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
EST: gi|91874026|gb|EB403983.1|EB403983
EST:     CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
EST: gi|74234252|gb|DT642166.1|DT642166
EST:     CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
EST: gi|211215259|gb|FL300694.1|FL300694
EST:     CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
EST: gi|211215262|gb|FL300697.1|FL300697
EST:     CATCACCAT-TCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
EST: gi|71774208|gb|DR972086.1|DR972086
EST:     CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAG                         CTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG
genomic: CATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacga ... tttgtcccagCTAACGGCGGTGGTGATGTTGCCGCTGTCGACCAGGATGATGTGTGGGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGGAGTTTCTGAATGGCCAGCCCAGGGGATGCGGAGGGCATCACCATCTCCATGGGGGAGCTGAGCGTAGAAGCAGCGACTTCGTCAGgtgagaacgaaatagcccagtatgatgcatgtctcttatccctgacaagggggcaaccatgtgcgcttccgtagccatgcgttgcttgcttaattattagcactgcttgtagttttatctcatgttggaacctagttggtttacttatgcaaaactttgtcccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC