Sequence
atgc intronic sequence ATGC exonic sequenceCAAGGAGACCCGGAAGATGCACGCCTGCGGCCACGACGCCCACACCGCGATGCTGCTCGGCGCCGCCAGGATCCTCCATGAGCGCCGCCACGACCTGCAGgttggtcgcagcttagaacctcgctcgccttcttccttccctcccttcattgtcgtcgcacaaagcgcgcttgcatatttgttgcaaattgtgtgtgcag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G833406_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g51060.1 (Oryza sativa), 5'ss of exon 2
CAAGGAGACCCGGAAGATGCACGCCTGCGGCCACGACGCCCACACCGCGATGCTGCTCGGCGCCGCCAGGATCCTCCATGAGCGCCGCCACGACCTGCAGgttg--gtcgcagct-tagaacctc--gctcgccttcttccttccctcccttcattgtcgtcgcacaaagcgcgcttgcatatttgttgcaaattgtgtgtgcag
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TAAGGTGGCCATGAAGATGCACGCCTGCGGCCACGACGCACACACCACCATGCTCCTCGGCGCCGCCAGGATCCTCCAGGAGCGACGCCATGAGCTGCAGgttactattgcaactatactccctcttgctcctcatccgctgttatctctttcaaagtttgctcttcttgctcaatagcttgcctgttg--gcttatcagag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110525445|gb|EE029629.1|EE029629EST: TGCTGCTCGGCGCCGCCAGGATCCTCCATGAGCGCCGCCACGACCTGCAG GGCACAGTAGTCCTCCTTTTCCAGCCGGGAGAGGAGGTCGGCATTGGCGCC
genomic: TGCTGCTCGGCGCCGCCAGGATCCTCCATGAGCGCCGCCACGACCTGCAGgttggtcgca ... tctctctcagGGCACAGTAGTCCTCCTTTTCCAGCCGGGAGAGGAGGTCGGCATTGGCGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAGGAGACCCGGAAGATGCACGCCTGCGGCCACGACGCCCACACCGCGATGCTGCTCGGCGCCGCCAGGATCCTCCATGAGCGCCGCCACGACCTGCAGgttggtcgcagcttagaacctcgctcgccttcttccttccctcccttcattgtcgtcgcacaaagcgcgcttgcatatttgttgcaaattgtgtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG