1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTGGCTGTCGTCGTGCTGGACGGATGGGGCGAGGCCAACCCCGACCAGTACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgctttcgtttacaccctttcttctgcttaactctcaattgcagtcattgtgggattgtgtagatgagttttttttttttttgtatttgatat...
species | Zea mays |
transcript | GRMZM5G833389_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCEST: gi|33102738|gb|CF062698.1|CF062698
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCEST: gi|211135945|gb|FK961385.1|FK961385
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211136895|gb|FK961399.1|FK961399
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCEST: gi|211136889|gb|FK961393.1|FK961393
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211135008|gb|FK961373.1|FK961373
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211137829|gb|FK961411.1|FK961411
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211533692|gb|FL186346.1|FL186346
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211135007|gb|FK961372.1|FK961372
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211135946|gb|FK961386.1|FK961386
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211135939|gb|FK961379.1|FK961379
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211135943|gb|FK961383.1|FK961383
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211135941|gb|FK961381.1|FK961381
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|148961947|gb|EE012741.2|EE012741
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCEST: gi|211136902|gb|FK961406.1|FK961406
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211137828|gb|FK961410.1|FK961410
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211136891|gb|FK961395.1|FK961395
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211134061|gb|FK961356.1|FK961356
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211134998|gb|FK961363.1|FK961363
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211135009|gb|FK961374.1|FK961374
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCEST: gi|211135942|gb|FK961382.1|FK961382
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|6526987|gb|AW216215.1|AW216215
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCEST: gi|211135005|gb|FK961370.1|FK961370
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCYCATGGAACAGCTGTGGGCEST: gi|211135004|gb|FK961369.1|FK961369
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211207538|gb|FL070014.1|FL070014
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGTATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211136898|gb|FK961402.1|FK961402
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|33102595|gb|CF062555.1|CF062555
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCEST: gi|211136890|gb|FK961394.1|FK961394
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|33103838|gb|CF063798.1|CF063798
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCACGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCEST: gi|211135000|gb|FK961365.1|FK961365
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTMGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCEST: gi|211533691|gb|FL186345.1|FL186345
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGTEST: gi|211135012|gb|FK961377.1|FK961377
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGCTGTCGTCGTGCTGGACGGATGGGGCGAGGCCAACCCCGACCAGTACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgctttcgtttacaccctttcttctgcttaactctcaattgcagtcattgtgggattgtgtagatgagttttttttttttttgtatttgatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA