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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTATGTCACGCCACCGGACACCGACATCTACTCCATTCCGAGGGTTCTTGCCCCGATGCCGCAGAAGgtgggaacacacttttcagctatttcgcatgtcagttcagatgaatgtgaaatgtcatgatgtgtgattcttgtttctcttgttgggattag

Basic information

species Zea mays
transcript GRMZM5G829928_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G829928_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g01890.1 (Oryza sativa), 5'ss of exon 2
ATGTATGTCACGCCACCGGACACCGACATCTACTCCATTCCGAGGGTTCTTGCCCCGATGCCGCAGAAGgtgggaacacacttttcagctatttcgcatgtcagttcagatgaatgtgaaatgtcat-gatgtgtgattcttgtttctcttgttgggattag
|||||||||||||| || ||||| |||||||||||||| || ||||||||||| ||||||||||| ||||||    | ||  | ||   | |||    |||   |||||   ||||| ||  | ||| || |||| ||  ||||||  || ||||  |  ||
ATGTATGTCACGCCGCCTGACACTGACATCTACTCCATCCCAAGGGTTCTTGCTCCGATGCCGCAAAAGgtg----cccatgtctcttttttttgatctgt---ttcaggcaaatgtaaatgggcattgaggtgtaatcattgttttcctggttgaaagcag

upper sequence: GRMZM5G829928_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g01950.1 (Oryza sativa), 5'ss of exon 2
ATGTATGTCACGCCACCGGACACCGACATCTACTCCATTCCGAGGGTTCTTGCCCCGATGCCGCAGAAGgtgggaacacacttttcagctatttcgcatgtcagtt-cagatgaatgtgaaatgtcat-gatgtgtgattcttgtttctcttgttgggattag
|||||||||||||| || ||||| |||||||| ||||| || ||||||||||| ||||||||||| ||||||   | | |  | ||     |||    |||| ||| ||    ||||| ||  | ||| || |||| |   ||||||  || ||||  |  ||
ATGTATGTCACGCCGCCTGACACTGACATCTATTCCATCCCAAGGGTTCTTGCTCCGATGCCGCAAAAGgtgcccatatatctctctctctttttttttgtctgtttcaagcaaatgtaaatgggcattgaggtgtaaccattgttttcctggttgaaagcag

upper sequence: GRMZM5G829928_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv18s0001g01770.t01 (Vitis vinifera), 5'ss of exon 2
ATGTATGTCACGCCACCGGACACCGACATCTACTCCATTCCGAGGGTTCTTGCCCCGATGCCGCAGAAGgtgggaacacacttttcagctatttcg-catgtcagttcagatg---aatgtgaaatgtcatgatgtgtgattcttgtttctcttgttgggattag-----
|||||||| || || |||||||| ||  | ||| ||||||| ||||||||||| || ||||||||||||||  ||   || ||| |  |  ||||  |||  || | | ||||   |||| |||     |   || |    |      |  |     |  | ||      
ATGTATGTTACTCCTCCGGACACTGATGTGTACGCCATTCCAAGGGTTCTTGCGCCAATGCCGCAGAAGgtatgatttcattttcccccattttcttcatacca-tgcggatggccaatgagaatgtaaacagtgggctgctaacaaatagcaaagagaaaatataataa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60340111|gb|DN207084.1|DN207084
EST:     ACACCGACATTTATTCCATTCCGAGGGTTCTTGCCCCGATGCCGCAGAAG                         TACGCGAGGTGCACGAAGAAAAACTTTGGCCGTTACCACGTGAGCGAGCCA
genomic: ACACCGACATCTACTCCATTCCGAGGGTTCTTGCCCCGATGCCGCAGAAGgtgggaacac ... ttgggattagTACGCGAGGTGCACGAAGAAAAACTTTGGCCGTTACCACGTGAGCGAGCCA