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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTATGATGTGACCAAGTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagctcagctttgatttcctctcgtctgcttgttgacagatgacagaaccgtaaccttatcggtccaatttcgtgacaattgcatatttgggaca...

Basic information

species Zea mays
transcript GRMZM5G829554_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G829554_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g12170.1 (Oryza sativa), 5'ss of exon 2
GTGTATGATGTGACCAAGTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgt---agtaagctcagctt--tgatttcctctcgtctgct----tgttgacagatgacagaaccgtaaccttatcggtccaatttcgtgacaattgcatatttgggaca
|||||||||||||||||||||||||| ||||||||||| ||||||||||| || || |||||||| |||   |  |   |||| ||  |   ||||| ||  |||      |  ||   ||||  | ||| || |   ||| |   | ||||   |||  ||   |  |       
GTGTATGATGTGACCAAGTTCTTGGAAGACCACCCTGGTGGAGAGGATGTTCTCCTGCATGCATCTGgtcagatgagattcagattcctccattcctatcaactgtaatgataatgtttgatgctaaaactgtgatgctattgaaactattt-acgacc-ttatctgct-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211452827|gb|FL196627.1|FL196627
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211454948|gb|FL196632.1|FL196632
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211452823|gb|FL196623.1|FL196623
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211450689|gb|FL196610.1|FL196610
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|44901108|gb|CK827653.1|CK827653
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|213183035|gb|FM189549.1|FM189549
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211452825|gb|FL196625.1|FL196625
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|6865249|gb|AW360599.1|AW360599
EST:     GTTCTTGGAGGACCCCCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACCCAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|116820869|gb|EC864137.1|EC864137
EST:     TTCTTGGAGGACCACCCTGGGTGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: TTCTTGGAGGACCACCCTGGG-GGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211450688|gb|FL196609.1|FL196609
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|13178477|gb|BG349735.1|BG349735
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211454951|gb|FL196635.1|FL196635
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211450683|gb|FL196604.1|FL196604
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGARGTGGGACACAGCACTTTAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211450686|gb|FL196607.1|FL196607
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211448569|gb|FL196598.1|FL196598
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211381737|gb|FL482094.1|FL482094
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|13178193|gb|BG349451.1|BG349451
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211450693|gb|FL196614.1|FL196614
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|86467016|gb|DY233386.1|DY233386
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211450692|gb|FL196613.1|FL196613
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|40333952|gb|CK368022.1|CK368022
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|9028546|gb|BE238541.1|BE238541
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|13178467|gb|BG349725.1|BG349725
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211452820|gb|FL196620.1|FL196620
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211454953|gb|FL196637.1|FL196637
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211452828|gb|FL196628.1|FL196628
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211450679|gb|FL196600.1|FL196600
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211452819|gb|FL196619.1|FL196619
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|116820806|gb|EC864056.1|EC864056
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGAGGGATGCCACGGGACGCATTCGAAGAGGTGGGACACAGCCACTT
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTG-GGGATGCCACGGAA-GCATTCGAAGAGGTGGGACACAGC-ACTT
EST: gi|211448570|gb|FL196599.1|FL196599
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|8665562|gb|BE186378.1|BE186378
EST:     GGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCCCGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211454949|gb|FL196633.1|FL196633
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|116825705|gb|EC869443.1|EC869443
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|16377987|gb|BI992222.1|BI992222
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|108823862|gb|EC277870.1|EC277870
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|113701860|gb|EE679364.1|EE679364
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211450680|gb|FL196601.1|FL196601
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211452816|gb|FL196616.1|FL196616
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211450691|gb|FL196612.1|FL196612
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211450690|gb|FL196611.1|FL196611
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211450682|gb|FL196603.1|FL196603
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211452815|gb|FL196615.1|FL196615
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211452821|gb|FL196621.1|FL196621
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211452829|gb|FL196629.1|FL196629
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAAGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|17930928|gb|BM267888.1|BM267888
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|86467017|gb|DY233387.1|DY233387
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAC                         CCTCTGGGGATGCCACGGAAGCTTTCAAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|16922751|gb|BM075743.1|BM075743
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211452824|gb|FL196624.1|FL196624
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|13178151|gb|BG349409.1|BG349409
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGA
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGA
EST: gi|17931934|gb|BM268894.1|BM268894
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211450681|gb|FL196602.1|FL196602
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211454952|gb|FL196636.1|FL196636
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211450685|gb|FL196606.1|FL196606
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTC
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTC
EST: gi|6695977|gb|AW289085.1|AW289085
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211454947|gb|FL196631.1|FL196631
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211454946|gb|FL196630.1|FL196630
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|76926976|gb|DV171082.1|DV171082
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|6993967|gb|AW453181.1|AW453181
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211452817|gb|FL196617.1|FL196617
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211452822|gb|FL196622.1|FL196622
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|13178019|gb|BG349277.1|BG349277
EST:     GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
genomic: GTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG
EST: gi|211452826|gb|FL196626.1|FL196626
EST:     TTCTTGGAGGACCACCCTGGGGGARAAGGAWGTGCTTCTCCATGCATCAG                         CCTCTGGGGATGCCACGGAAGCATTCGAAGANGTGGGACACAGCACTTCAG
genomic: TTCTTGGAGGACCACCCTGGGGGAGA-GGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 47 (downstream exon)
Score: 101

GTGTATGATGTGACCAAGTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAGCCGTCAGCATGATGGACAGCTACTTGATTGGAAGCATCAAGGACTATGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 218

GTGTATGATGTGACCAAGTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAGCCGTCAGCATGATGGACAGCTACTTGATTGGAAGCATCAAGGACTATGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 214

GTGTATGATGTGACCAAGTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAGCCGTCAGCATGATGGACAGCTACTTGATTGGAAGCATCAAGGACTATGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 3067

GTGTATGATGTGACCAAGTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagct ... atttttgaagCCTCTGGGGATGCCACGGAAGCATTCGAAGAGGTGGGACACAGCACTTCAGCCGTCAGCATGATGGACAGCTACTTGATTGGAAGCATCAAGGACTATGT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTATGATGTGACCAAGTTCTTGGAGGACCACCCTGGGGGAGAGGATGTGCTTCTCCATGCATCAGgtagtaagctcagctttgatttcctctcgtctgcttgttgacagatgacagaaccgtaaccttatcggtccaatttcgtgacaattgcatatttgggaca

- - - - - - - - - -  TTGGAG
- - - - - - - - - - - TGGAGG
- - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - -  AGGATG