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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCCAAGAAACAGAGGTTGTTGTGGGCATCCACCCGGTGTCAAGAACCCAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACGgtatgcttccacgacgagttctccacttgaactggcgttgtttcttatcatcgcaaagataactccggagtgatgatgcgcttttcag

Basic information

species Zea mays
transcript GRMZM5G828312_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G828312_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g70170.1 (Oryza sativa), 5'ss of exon 5
-GGTGCCAAGAAACAGAGGTTGTTGTGGGCATCCACCCGGTGTCAAGAACCCAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACGgtatgcttccacgacgagttctccacttgaactggcgttgtttcttatcatcgcaaagataactccggagtgatgatgcgcttttcag-------------------------------------
 ||||||||||| |||||||||||||||||||| |||  |||| |||||||| || || || |||||||||||| | ||   |||||| ||||||||||| ||  | ||||||  | | ||  |  | |    |    | | || ||   || ||  |    |   ||   |         |   |  |                                     
AGGTGCCAAGAAGCAGAGGTTGTTGTGGGCATCTACC-AGTGTGAAGAACCCTGCATACCCAGACACTCTTTACGTGGATCCTCTCATCGGACCTGACACCgtgagtttccacagcaaatttacttcatcttatcatctagattgttggaatagctgaatagagctcgacattccatcatacacatgggcataatttcgaagcaaatgctaactgtgcgctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93014947|gb|EB640467.1|EB640467
EST:     GGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
genomic: GGACCTGACACGgtatgcttcc ... cgcttttcagGTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
EST: gi|84977486|gb|DW475908.1|DW475908
EST:     ATCGACAGTCTCATTGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAGGCATTCATAGACCACGGCACT
genomic: ATCGACAGTCTCATTGGACCTGACACGgtatgcttcc ... cgcttttcagGTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
EST: gi|7118955|gb|AW497535.1|AW497535
EST:     CAGCTTATACCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACG                         GTCAACACGATGGCCGACCAAGCTTTGCACGCATTCATAGNCCACGGCACT
genomic: CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACGgtatgcttcc ... cgcttttcagGTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
EST: gi|30032095|gb|CB833946.1|CB833946
EST:     CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
genomic: CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACGgtatgcttcc ... cgcttttcagGTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
EST: gi|45847366|gb|CN071309.1|CN071309
EST:     CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACG                         GTCAACACGATGCCCGATCAAGCTTTGCAGGCATTCATAGACCACGGCACT
genomic: CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACGgtatgcttcc ... cgcttttcagGTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
EST: gi|22489199|gb|BU049135.1|BU049135
EST:     CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAGGCATTCATAGACCACGGCACT
genomic: CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACGgtatgcttcc ... cgcttttcagGTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
EST: gi|24767258|gb|CA402402.1|CA402402
EST:     CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCCCT
genomic: CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACGgtatgcttcc ... cgcttttcagGTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
EST: gi|16927472|gb|BM080541.1|BM080541
EST:     CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
genomic: CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACGgtatgcttcc ... cgcttttcagGTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
EST: gi|61118892|gb|DN559853.1|DN559853
EST:     AGTCTCATTGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAGGCATTCATAGACCACGGCACT
genomic: AGTCTCATTGGACCTGACACGgtatgcttcc ... cgcttttcagGTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
EST: gi|7145485|gb|AW506966.1|AW506966
EST:     CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
genomic: CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACGgtatgcttcc ... cgcttttcagGTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
EST: gi|17970104|gb|BM276885.1|BM276885
EST:     CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAGGCATTCATAGACCACGGCACT
genomic: CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACGgtatgcttcc ... cgcttttcagGTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
EST: gi|161407702|gb|DW042447.1|DW042447
EST:     CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAGGCATTCATAGACCACGGCACT
genomic: CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACGgtatgcttcc ... cgcttttcagGTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
EST: gi|16925436|gb|BM078504.1|BM078504
EST:     CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT
genomic: CAGCTTATCCCGACACTCTTTACATCGACAGTCTCATTGGACCTGACACGgtatgcttcc ... cgcttttcagGTCAACACGATGCCCGACCAAGCTTTGCACGCATTCATAGACCACGGCACT