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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGCGGCAGCGGGGCGGCGGTGCCAGCGTGCTCCGGCTCTCTTCCCGGCGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccctgtttctcttgaatccaagttcgctgcttggggtcggaaactctgaaataggcgggtgcctggtggtgttcgagaagtaaaaagaatgctcatggatggttggttggttggcggatcgccggactgcag

Basic information

species Zea mays
transcript GRMZM5G828229_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211297775|gb|FL337585.1|FL337585
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|211147215|gb|FL154652.1|FL154652
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|211157246|gb|FL334279.1|FL334279
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|78103956|gb|DV522374.1|DV522374
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|211178644|gb|FL098422.1|FL098422
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|6587631|gb|AW244949.1|AW244949
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|31353724|gb|CD438081.1|CD438081
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|211147220|gb|FL154657.1|FL154657
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|148931941|gb|EC875173.2|EC875173
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|148933346|gb|EC877008.2|EC877008
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|149075601|gb|EE164139.2|EE164139
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|211147218|gb|FL154655.1|FL154655
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|211147219|gb|FL154656.1|FL154656
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|148959619|gb|EC905559.2|EC905559
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|211178641|gb|FL098419.1|FL098419
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|211178640|gb|FL098418.1|FL098418
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|211149413|gb|FL321993.1|FL321993
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|211467623|gb|FL333695.1|FL333695
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|148995891|gb|EE035131.2|EE035131
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|211333832|gb|FL364099.1|FL364099
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|211147217|gb|FL154654.1|FL154654
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|211178645|gb|FL098423.1|FL098423
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|148990927|gb|EE032350.2|EE032350
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
EST: gi|211147221|gb|FL154658.1|FL154658
EST:     CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGA                         GTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT
genomic: CGGACCTTCTCGGTCTCCGCGGCGGCCGGGTTCGACAACCAGAACCGCGAgtgggtgccc ... cggactgcagGTATGTGATCGTCGGGGGAGGGAACGCTGCGGGTTACGCCGCCAGGACGTT