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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCCAACAACCTCAAGGACGCACTCAAGTACTCGGCGCAGATGCTCTCCGAACTGCGCACCTCGCGACTATCGCCGCACAAGTACTACGAGCTGTgtgagtaactgtggatttggagctgctgggtctgtggaattctggaagtgggatcggtcggaattctgatgggattcacttgtccgctgcag

Basic information

species Zea mays
transcript GRMZM5G825524_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825524_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 5'ss of exon 2
GATTCCAACAACCTCAAGGACGCACTCAAGTACTCGGCGCAGATGCTCTCCGAACTGCGCACCTCGCGACTATCGCCGCACAAGTACTACGAGCTGTgtgagtaactgt--ggatttggagctgctgggtctgtggaattctggaagtgggatcggtcggaattctgatgggattcacttgtcc-gctgcag
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GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCCGAGCTGCGGACCTCGCGGCTCTCGCCGCACAAGTATTATGATCTATgtgagtgtttcttatgtgtcaggattcctcagtgcgcccaattttggctgtggtttcagctgggatttgatgggggtttattgattttgctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211323478|gb|FL043268.1|FL043268
EST:     CTCCGAACTGCGCACCTCGCGACTATCGCCGCACAAGTACTACGAGCTGT                         ACATGAGGGCGTTTGATGAGATGAAGAAGCTGGAGATGTTCTTCAGGGAGG
genomic: CTCCGAACTGCGCACCTCGCGACTATCGCCGCACAAGTACTACGAGCTGTgtgagtaact ... tccgctgcagACATGAGGGCGTTTGATGAGATGAAGAAGCTGGAGATGTTCTTCAGGGAGG
EST: gi|18659312|gb|BM500271.1|BM500271
EST:     CTCCGAACTGCGCACCTCGCGACTATCGCCGCACAAGTACTACGAGCTGT                         ACATGAGGGCGTTTGATGAGATGAAGAAGCTGGAGATGTTCTTCAGGGAGG
genomic: CTCCGAACTGCGCACCTCGCGACTATCGCCGCACAAGTACTACGAGCTGTgtgagtaact ... tccgctgcagACATGAGGGCGTTTGATGAGATGAAGAAGCTGGAGATGTTCTTCAGGGAGG