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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAGgttagtaaattcttcttccatttgctctttattgcgctctgttctttctagatttcagccaatatataagcatggttcaaactagaacagcaagctaatatacaagcatggttcaaactagagcagcagcctgtttcaggtgctcttttttcgtaactaatcatgatcattttcttcag

Basic information

species Zea mays
transcript GRMZM5G825110_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825110_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g55360.4 (Oryza sativa), 5'ss of exon 2
TAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAGgttagtaaattcttcttccatttgctctttattgcgctctgttctttctagatttcagccaatatataagcatggttcaaactagaacagcaagctaatatacaagcatggttcaaactagagcagcagcctgtttcaggtgctcttttttcgtaactaatcatgatcattttcttcag
      |  | || ||| |||| |||||||||| |||||||| ||||||||||||||||||||||| ||||  || |  || | || |||  |||||||  |  | ||| |  |          ||||     |          || | ||||   || |||    |||| |        | | |  |  | | || ||      ||||                                                                   
-----ATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGgtaggctatttcattatga---caaattttagcaaacagaaaggccccttggtttc--tcagtat----gcattgcct---tcatatctccgtgtttatttatttttgtggt-------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211033695|gb|FL002056.1|FL002056
EST:     TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAG                         GCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
genomic: TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAGgttagtaaat ... ttttcttcagGCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
EST: gi|78079230|gb|DV507642.1|DV507642
EST:     TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAG                         GCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
genomic: TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAGgttagtaaat ... ttttcttcagGCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
EST: gi|71439838|gb|DR820888.1|DR820888
EST:     TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAG                         GCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
genomic: TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAGgttagtaaat ... ttttcttcagGCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
EST: gi|71426534|gb|DR807584.1|DR807584
EST:     TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAG                         GCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
genomic: TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAGgttagtaaat ... ttttcttcagGCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
EST: gi|76287486|gb|DV027054.1|DV027054
EST:     TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAG                         GCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
genomic: TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAGgttagtaaat ... ttttcttcagGCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
EST: gi|149000638|gb|EE037841.2|EE037841
EST:     TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAG                         GCTTCCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
genomic: TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAGgttagtaaat ... ttttcttcagGCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
EST: gi|71426083|gb|DR807133.1|DR807133
EST:     TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAG                         GCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
genomic: TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAGgttagtaaat ... ttttcttcagGCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
EST: gi|93283949|gb|EB676213.1|EB676213
EST:     TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAG                         GCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
genomic: TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAGgttagtaaat ... ttttcttcagGCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
EST: gi|76014867|gb|DT942037.1|DT942037
EST:     TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAG                         GCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
genomic: TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAGgttagtaaat ... ttttcttcagGCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
EST: gi|78121241|gb|DV539625.1|DV539625
EST:     TTTCTGCTTCTCATGTAGGGCGTGAAAGACGTCGCAAACATCCATCTGAG                         GCTACCACAGATGGAAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT
genomic: TTTCTGCTTCTCATGTAGGGCGTGTAAGACGTCGCAAACATCCATCTGAGgttagtaaat ... ttttcttcagGCTACCACAGATGGGAATAGAGCTAATGGACAACCGTTGCTTGTCAATGAT