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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCACTAGATGCTGGCGCATGGATGTTCAATGTCGTCACATCTGTTGGTATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcatgcccaatcttcattcctaactgcatgcgatgcctgattcacgcgcgccttcttttctatctaaaagtaaactactattgtgcagaaaaattcagtctgcttgtcttgtgctaatttgttcactaccttttgctcctacag

Basic information

species Zea mays
transcript GRMZM5G823629_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 2
GCAGCACTAGATGCTGGCGCATGGATGTTCAATGTCGTCACATCTGTTGGTATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcatgcccaatcttcattcctaactgcatgcgatgcctgattcacgcgcgccttcttttctatctaaaagtaaactactattgtgcagaaaaattcagtctgcttgtcttgtgctaatttgttcactaccttttgctcctacag
|||||| |||||||||| || |||||||||||  | || ||||||||||||||||||||||||||||| | ||||||||| || ||||| ||||||||||||| ||  |     | |  | || | | | |   | |          |||   | |   ||  ||  |    ||  | ||    ||     |  |   | | |     | || ||||| ||||| ||        || |||||  |||||
GCAGCATTAGATGCTGGAGCTTGGATGTTCAACATTGTGACATCTGTTGGTATCATCATGGTCAACAAGGCCTTAATGGCTACACATGGTTTTAGTTTTGgtacgataa-----attgataatgctttattatttac----------tcatatgtgtgatcacttgga----aagatgaatctgtaacaaactcagctactgaac--acatg-cttgtactaatatgggggtg--ctattgcttgtacag

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 2
GCAGCACTAGATGCTGGCGCATGGATGTTCAATGTCGTCACATCTGTTGGTATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcatgcccaa--tcttcattcctaactgcat-----gcgatgcctgattcacgcgcgccttctttt-ctatctaaaagtaaactactattgtgcagaaaaattcagtctgcttgtcttgtgctaatt-tgttcactaccttttgctcctacag
||||  || |||||||| |||||||||||||| || || ||||| ||||||||||||||||||||||| |  |||||||| || ||||| |||||||||||||||| |||||   |  || ||| || |   || ||        ||||||  | | | ||     |   |   |     |||   |||||   |||||||| |||   ||||| | || | ||||||||||  |||   | |   | || |  | |||
GCAGTGCTGGATGCTGGAGCATGGATGTTCAACGTTGTGACATCAGTTGGTATCATCATGGTCAACAAGGCATTAATGGCCACACATGGTTTTAGTTTTGgtaaga-catgctataattcctcactcgtggttgaattgtcaagaatgccttgtccgcacgtcttatggatagttggactaaaccgaactatcgttgtgcagcaaa--ccagtcagatt-ttttgtgctaatgatgtgttccattgtgtgtttgtgcag

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA10G36620.1 (Glycine max), 5'ss of exon 1
GCAGCACTAGATGCTGGCGCATGGATGTTCAATGTCGTCACATCTGTTGGTATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaag--agcatgcccaatcttcattcctaactgcatgcgatgcctgattcacgcgcgccttcttttctatctaaaagtaaactactattgtgcagaaaa-attcagtctgcttgtcttgtgctaatttgttcactaccttttgctcctacag
||| || | || || |  |||||| |||||||||| ||||| ||||||||  | ||||| || |||||||  || ||||| ||| ||||||| |||||||||||   | | | || | | |||| |  || |||       | | ||  | ||    |  || ||     | |  || |  |    ||  | |  ||| | |   |                                               
GCAACAGTGGACGCAGCTGCATGGGTGTTCAATGTTGTCACTTCTGTTGGAGTTATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaaattaactttccaatttttcactgatatctg-------ttcttgggttacat-tgtgtttttggaattatggaatttgatatatagagggaggaagagagataaa---------------------------------------------

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 2
GCAGCACTAGATGCTGGCGCATGGATGTTCAATGTCGTCACATCTGTTGGTATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcatgcccaatcttcattcctaactgcatgcgatgcctgattcacgcgcgccttcttttctatctaaaagtaaactactattgtgcagaaaaattcagtctgcttgtcttgtgctaatttgttcactaccttttgctcctacag
|| ||  | ||||| |  ||||||||||||||||| || ||||||||||| |||||||| || |||||||  || |||||  || ||||||| |||||||||||    || ||| || |  ||| || | ||     || |  |   | |   ||   |||  |                 ||| ||  |||    |  || | | |   | | ||    | ||||||  | |||   ||||        
GCTGCCGTGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTGgtaa----attccctat-tcaatttcttaatg-----gacgtttctgttattggcaaattcccta----------------tacgatcatgctctgatgttaattttttatcttttaatgtgatttgtctattactgcttgcag------

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 1
GCAGCACTAGATGCTGGCGCATGGATGTTCAATGTCGTCACATCTGTTGGTATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcatgcccaatcttcattcctaactgcatg-cgatgcctgattcacgcgcgccttcttttctatctaaaagtaaactactattgtgcagaaaaattcagtctgctt--gtcttgtgcta--atttgttcactaccttttgctcctacag---------
|| ||  | ||||| |  ||||||||||||||||| || ||||||||||| |||||||| || |||||||  || ||||| ||| ||||||| |||||||||||    || ||  ||     ||| |||   |||  |  |   || |  ||    |  |  ||| | |  ||  |    |  |  ||  |||    |  || | | |  ||   |||| |  |   ||||||  | |||   ||||  | |||          
GCTGCTATGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaa----attccttattcaatttcttaatgacatttctgttattggtatac---tgagtcttttcccaggtagtatatgatcatgatcatgctctgatgttaattttttttttatcttttaatgtgatttgtctattactgcttgcggccacaacattaacag

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 1
lower sequence: AT4G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
GCAGCACTAGATGCTGGCGCATGGATGTTCAATGTCGTCACATCTGTTGGTATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcatgcccaatcttcattcctaactgcatgcg-atgcctgattcacgcgcgccttcttttctatctaaaagtaaactactattgtgcagaaaaattcagtctgcttgtcttgtgctaatttgttcactaccttttgctcctacag
||| || |||||||||  || |||||||||||||| || || ||||||||||||||||| || || ||||  |||||||| ||| |||||||||| |||||||      | |   |||   |  | ||  | ||  |  ||     | | |   |     | ||||| || | || | |                                                                        
GCAACATTAGATGCTGCTGCTTGGATGTTCAATGTTGTTACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCTACTTATGGCTTTAGCTTTGgtact--tcttcttcatcaa-aaccttatttacaatcatatcttcaaattatttgtctaatattttcaatttcaatgcag-----------------------------------------------------------------------

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 1
lower sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 2
GCAGCACTAGATGCTGGCGCATGGATGTTCAATGTCGTCACATCTGTTGGTATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcatgcccaatcttcattcctaactgcatgcgatgcctgattcacgcgcgccttcttttctatctaaaagtaaactactattgtgcagaaaaattcagtctgcttgtcttgtgctaatttgttcactaccttttgctcctacag
|||||  |||||||||  || |||||||||||||||||||| ||||||||||||||||| || || ||||  |||||||||||| |||| | ||| ||||||||     |      ||||     || |||  |  || |  ||     ||  |   ||  | |||||  |     | |  ||  ||  |||||                                                        
GCAGCCGTAGATGCTGCTGCGTGGATGTTCAATGTCGTCACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCGACTTATGGTTATAGCTTTGgtaaagatttc-----tcttttgctcttacttaagacgttttctttgaaacctgtagctattcttctaatttg--tttacttatcatgttgcag--------------------------------------------------------

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 1
lower sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 2
GCAGCACTAGATGCTGGCGCATGGATGTTCAATGTCGTCACATCTGTTGGTATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcatgcccaatcttcattcctaactgcatgcgatgcctgattcacgcgcgccttcttttctatctaaaagtaaactactattgtgcagaaaaattcagtctgcttgtcttgtgctaatttgttcactaccttttgctcctacag
||| |  | ||||||| |||||||||||||||||| ||||| || ||||| ||||| ||||||||||||| ||||||||| ||  |||| || |||||||||| |    | ||  ||    ||  | | |  || ||  |     ||| |    |  | | | |  ||   | | |  |  |   | ||    |     |    | ||| | ||                                    
GCAACTGTTGATGCTGCCGCATGGATGTTCAATGTTGTCACTTCGGTTGGAATCATTATGGTCAACAAAGCCTTAATGGCTACATATGGATTCAGTTTTGgtatg----tccctcatgactat--caacccacacgctttaatcaatttat---cagcctttatattactcatacgatagttctaaatgcattg-----tgtcttatgcatttc------------------------------------

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 1
lower sequence: Vv18s0072g00080.t01 (Vitis vinifera), 5'ss of exon 1
GCAGCACTAGATGCTGGCGCATGGATGTTCAATGTCGTCACATCTGTTGGTATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcatgcccaatcttcattcctaactgcatgcgatgcctgattcacgcgcgccttcttttctatctaaaagtaaactactattgtgcagaaaaattcagtctgcttgtcttgtgctaatttgttcactaccttttgctcctacag
|||||||||||||| | |||||||||||||||||| ||||| |||||||| || ||| | ||||||||||  |||||||| ||  |||| || |||||||||||   | |  | ||  |  |||      ||| |    |   ||||| |         | ||  || | || |  |     |    ||||  || || |||   || |||                                       
GCAGCACTAGATGCAGCCGCATGGATGTTCAATGTTGTCACTTCTGTTGGGATTATCCTTGTCAACAAAGCATTAATGGCTACATATGGATTCAGTTTTGgtaatt-cttttctaaagtaaatt------tgcgttttttctttgattaat-----ttcttttgcctgtgtatattttttacatgcatgtgtggataa-ttctcacttcttaa-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78081629|gb|DV510041.1|DV510041
EST:     TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTG                         CTACAACACTGACTGGACTTCATTTTGCAATGACAACTTTGATGACGTTAG
genomic: TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcat ... gctcctacagCTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
EST: gi|78079408|gb|DV507820.1|DV507820
EST:     TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTG                         CTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
genomic: TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcat ... gctcctacagCTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
EST: gi|211496862|gb|FL065359.1|FL065359
EST:     TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTG                         CTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
genomic: TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcat ... gctcctacagCTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
EST: gi|76280570|gb|DV020138.1|DV020138
EST:     TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTG                         CTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
genomic: TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcat ... gctcctacagCTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
EST: gi|211496860|gb|FL065357.1|FL065357
EST:     TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTG                         CTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
genomic: TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcat ... gctcctacagCTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
EST: gi|71445237|gb|DR826287.1|DR826287
EST:     TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTG                         CTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
genomic: TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcat ... gctcctacagCTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
EST: gi|76281274|gb|DV020842.1|DV020842
EST:     TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTG                         CTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
genomic: TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcat ... gctcctacagCTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
EST: gi|78111635|gb|DV530032.1|DV530032
EST:     TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTG                         CTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
genomic: TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcat ... gctcctacagCTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
EST: gi|50328555|gb|CO523681.1|CO523681
EST:     TATCATCATGGTCAACAAAGCCTTAATGGCGACTCATGGCTTTAGTTTTG                         CTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
genomic: TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcat ... gctcctacagCTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
EST: gi|211496859|gb|FL065356.1|FL065356
EST:     TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTG                         CTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
genomic: TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcat ... gctcctacagCTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
EST: gi|211496857|gb|FL065354.1|FL065354
EST:     TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTG                         CTACAACACTGACTGGACTTCATTTTGCAATGMCAACCTTGATGACGTTAG
genomic: TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcat ... gctcctacagCTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
EST: gi|211496858|gb|FL065355.1|FL065355
EST:     TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTG                         CTACAACACTGACTGGACT
genomic: TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcat ... gctcctacagCTACAACACTGACTGGACT
EST: gi|91051408|gb|EB161826.1|EB161826
EST:     TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTG                         CTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG
genomic: TATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcat ... gctcctacagCTACAACACTGACTGGACTTCATTTTGCAATGACAACCTTGATGACGTTAG