1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCACTTCTATTTGCAGGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatctgaatgaaaatttatttccttagcgcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacag
species | Zea mays |
transcript | GRMZM5G822591_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG GCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACEST: gi|31352863|gb|CD437220.1|CD437220
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
EST: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG GCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACEST: gi|28873822|gb|CB329759.1|CB329759
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
EST: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG GCTGGCCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACEST: gi|28930886|gb|CB334247.1|CB334247
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
EST: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG GCTGGTCAATTGCATCTTGTGAAACCATATATGGCTGCAGTTCAGAGTAACEST: gi|116818665|gb|EC861713.1|EC861713
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
EST: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG GCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACEST: gi|31664358|gb|CD573083.1|CD573083
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
EST: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG GCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACEST: gi|67014450|gb|CO443199.1|CO443199
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
EST: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG GCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACEST: gi|67016082|gb|CO444831.1|CO444831
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
EST: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG GCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACTTCTATTTGCAGGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatctgaatgaaaatttatttccttagcgcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacag
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