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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGCATTGTTGCCCCTGATACAAAGAATCCACTTTCTGATCCCTACCCATTCAATCTTATGTTCCAGACATCTATTGGCCCCACTGGTCTTAGCGTGGGgtgagaatatctccattctctctgtggttatgttccttttgtgttgattggctaaaaaggttcaattttgtgtggcggaaatag

Basic information

species Zea mays
transcript GRMZM5G821551_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G821551_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g42560.1 (Oryza sativa), 5'ss of exon 2
ACGGCATTGTTGCCCCTGATACAAAGAATCCACTTTCTGATCCCTACCCATTCAATCTTATGTTCCAGACATCTATTGGCCCCACTGGTCTTAGCGTGGGgtgagaatatc----tccattctctct-------gtggtta-tgttcctt--------------ttgtgttgattggctaaaaaggttcaattttgtgtggcggaaatag
| || ||||||||||||||||| ||||| || || |||||||||||||| ||||||||||||||||||||||| || ||||| || |||||||  || |||| ||||||||    | || | | | |       | | ||| |||||  |              || || ||||||||| ||   |||||||||||||||    ||| ||
ATGGGATTGTTGCCCCTGATACTAAGAACCCGCTCTCTGATCCCTACCCGTTCAATCTTATGTTCCAGACATCCATCGGCCCTACCGGTCTTAATGTTGGgtaagaatatcaatgttcactttttttaacccaagagattaatgttcactgtttaattctgttgttatgctgattggctgaatgtgttcaattttgtgtga-acaaacag

upper sequence: GRMZM5G821551_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv17s0000g00160.t01 (Vitis vinifera), 5'ss of exon 2
ACGGCATTGTTGCCCCTGATACAAAGAATCCACTTTCTGATCCCTACCCATTCAATCTTATGTTCCAGACATCTATTGGCCCCACTGGTCTTAGCGTGGGgtgagaatat--ctcca------------ttctctctgtggttat--gttccttttgtgttgattggctaaaaaggttcaattttgtgtggcggaaatag-------------------------------------------------------------
| || ||   ||||||||||||||| || || ||||||| ||| || ||||||||| | ||||||||||| || || |||||  ||||  | |||   |||| |  ||||   ||||            ||  || | | || ||  | || | |    || |||    ||  ||  ||  |||  |||  |     |                                                               
ATGGTATAACTGCCCCTGATACAAAAAACCCGCTTTCTGCTCCTTATCCATTCAATTTGATGTTCCAGACCTCAATCGGCCCATCTGGCTTGAGCCCAGGgtaaatatatgattccaattcaaacaaatttacctatttcgtgataagctcatatgcaatttattctgcaaccagcctctgtttattgtcacttgttttatcttcataggtgtgcagccttatattatcctgtcttttttcttacatacaatctactgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32803916|gb|CD956152.1|CD956152
EST:     TTCAATCTTATGTTCCAGACATCTATTGGCCCCACTGGTCTTAGCGTGGG                         GTATATGCGACCAGAGACCGCACAGGGTATTTTTGTAAACTTCAAGGATC
genomic: TTCAATCTTATGTTCCAGACATCTATTGGCCCCACTGGTCTTAGCGTGGGgtgagaatat ... gcggaaatagGTATATGCGACCAGAGACCGCACAGGGTATTTTTGTAAACTTCAAGGATC