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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCCGACCAGTACAACCCGGACGAGCCCATCATCAGCAACACCTCCTGCACGACCAACTGCCGCGTGCCATTCGTCAAGGTCCTCGACCAAAAGTTCGgtgcgtgccttcttcgctcaaactcaaaccatacgtaacggcgcatgcatactcatccgtcaccgtcaccgccaccgcag

Basic information

species Zea mays
transcript GRMZM5G821433_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G821433_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g38600.2 (Oryza sativa), 5'ss of exon 3
AATGCCGACCAGTACAACCCGGACGAGCCCATCATCAGCAACACCTCCTGCACGACCAACTGCCGCGTGCCATTCGTCAAGGTCCTCGACCAAAAGTTCGgtgcgtgc-cttcttcgctcaaactcaaaccatacgtaacggcgcatgcatactcatccgtcaccgtc------accgccaccgcag
|||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||| ||  || ||||| ||| |||||||||| ||||||||| ||||| |     ||| ||    | | ||      ||     |   |   |||   |      |        | |     |||||
AATGCCGACCAGTACAGCCCCGACGAGCCCATCATCAGCAACGCCTCCTGCACCACCAACTGCCTCGCCCCCTTCGTGAAGATCCTCGACCAGAAGTTCGgtacgtgcgcacacgcgcgcatcagcgatcctcgaccaattttactctctctctctctctctgatgcttaaccaatcaatggcgcag

upper sequence: GRMZM5G821433_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv14s0068g00680.t01 (Vitis vinifera), 5'ss of exon 4
AATGCCGACCAGTACAACCCGGACGAGCCCATCATCAGCAACACCTCCTGCACGACCAACTGCCGCGTGCCATTCGTCAAGGTCCTCGACCAAAAGTTCGgtg------cgtgccttcttcgctcaaactcaaaccatacgtaacggcgcatgcatactcat--ccgtcaccgtcaccgccaccgcag
||||| ||| | ||||| |  || ||| |||||||||||||  | |||||||| ||||||||||  |  || |||||||||||||||||||| |||||||||       | | ||   |||| ||    |   |||||      |    |||   |    ||    |   |    |    ||  ||||
AATGCAGACGAATACAATCATGATGAGTCCATCATCAGCAATGCTTCCTGCACAACCAACTGCCTTGCCCCCTTCGTCAAGGTCCTCGACCAGAAGTTCGgtaattttacatacccctttcg-tctgtttgtcaccatggtcttccctccatcgctttgaatgatgggagcttaaaaattcatggcag

upper sequence: GRMZM5G821433_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ13677 (Selaginella moellendorffii), 5'ss of exon 4
AATGCCGACCAGTACAACCCGGACGAGCCCATCATCAGCAACACCTCCTGCACGACCAACTGCCGCGTGCCATTCGTCAAGGTCCTCGACCAAAAGTTCGgtgcgtgccttcttc-gctcaaactcaaaccatacgtaacggcgcatgcatactcatccgtcaccgtcaccgccaccgcag
|| ||||| || ||||  ||    ||||| |||||||||||| ||||||||||||| |||||||  |  || |||||||| ||||| ||  | |||||||||  || ||| |    ||||   ||| | | || | ||    | | ||||   ||                          
AACGCCGAGCAATACAGTCCCACGGAGCCGATCATCAGCAACGCCTCCTGCACGACGAACTGCCTGGCTCCCTTCGTCAAAGTCCTGGATGAGAAGTTCGgtaagttcctccaaaagctctctctcgatcgatgc-tagaaactcttgcaacttccag-----------------------