1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACGAAGgtcagtgtagtggcatcagatctggaattctcagaaatggttatcttatctcatgatttctttaagcacttggtttttttagaagatagtggattgaacattgtttcttgaaatttagttgtttttttccgtatacttctccaaacaggcctgcttgactacattatgtgcatattgtgattctcagcag
species | Zea mays |
transcript | GRMZM5G819212_T05 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACGAAG CEST: gi|211286457|gb|FL309059.1|FL309059
genomic: GTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACGAAGgtcagtgtag ... ttctcagcag-
EST: GTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACGAAG CEST: gi|211290851|gb|FL314522.1|FL314522
genomic: GTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACGAAGgtcagtgtag ... ttctcagcag-
EST: GTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACGAAG AGGAAGTCAAAGATTTTRGAGTCAATATGGCACTATCCATGCTAAAATTCTEST: gi|33467473|gb|CF244522.1|CF244522
genomic: GTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACGAAGgtcagtgtag ... ttctcagcagAGGAAGTCAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTT
EST: GTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACGAAGCAGEST: gi|211269504|gb|FL311290.1|FL311290
genomic: GTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACG-A--AGgtcagtgtag ... ttctcagc
EST: GTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACGAAG AGGAAGTCAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTEST: gi|211336107|gb|FL367026.1|FL367026
genomic: GTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACGAAGgtcagtgtag ... ttctcagcagAGGAAGTCAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTT
EST: GTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTACTGAAGACGAAGCAG
genomic: GTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACG-A--AGgtcagtgtag ... ttctcagc
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTTTCGGTGCTTCGTGCCACAAGTGGAGGAAGGTTCCGGCATGGCGACTCCACTGTGTTGCTGAAGACGAAGgtcagtgtagtggcatcagatctggaattctcagaaatggttatcttatctcatgatttctttaagcacttggtttttttagaagatagtggattgaacattgtttcttgaaatttagttgtttttttccgtatacttctccaaacaggcctgcttgactacattatgtgcatattgtgattctcagcag
- - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA