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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCGGGCGATCCAAGCAAGAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgctactgaactgagttcctatctattttcctgtatccgcaagttgagtattgtgaatgctgcattattgttattggcgagcagaattggacaa...

Basic information

species Zea mays
transcript GRMZM5G818887_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G818887_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os10g41110.1 (Oryza sativa), 5'ss of exon 2
GGAAGCGGGCGATCCAAGCAAGAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgctactgaactgagttcctatctattttcctgtatccgcaagttgagtattgtgaatgctg-cattattgttattggcgagcagaattggacaa-
||| ||||||||||| |||||||||||||||||||||||  || | ||||| |||||||||||| | || ||||||||| | || || || ||||   |  || ||    ||        | || |  ||     | || ||| |||||||| |         | ||| |   
GGAGGCGGGCGATCCGAGCAAGAGGAAGCCGTATCTCCCTCCCGACAAGCAATTCCTCGTCACCAGGAACGgtatgctgattctaaattg-gttctatttcatcttgtgctaggattcgatggaatgctgcattgggtgacatgattgttat-gctagtttccactggtcttg

upper sequence: GRMZM5G818887_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g10290.2 (Oryza sativa), 5'ss of exon 2
GGAAGCGGGCGATCCAAGCAAGAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgctactgaactgagttcctatctattttcctgtatccgc--aagttgagtattgtgaatgctg-cattattgttattggcgagcagaattggacaa
||| ||||||||||| |||||||||||||||||||||||  |  | ||||| || ||||||||| | || ||||||||| | ||| | ||   | |||| |  | |  |  || ||    | | || |  ||     | || ||| ||||||||           | |    | 
GGAGGCGGGCGATCCGAGCAAGAGGAAGCCGTATCTCCCACCTGACAAGCAATTTCTCGTCACCAGGAACGgtatgctgattctggattg--cttctatttcatcttgtacatgcgatggaatggaatgctgcattgggtggcatgattgttatgcttagtttccacttccta-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211329322|gb|FL012784.1|FL012784
EST:     GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG                         TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: gi|61236719|gb|DN586461.1|DN586461
EST:     GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG                         TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: gi|148960724|gb|EE011368.2|EE011368
EST:     GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG                         TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: gi|76013821|gb|DT940991.1|DT940991
EST:     GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG                         TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: gi|78091451|gb|DV519825.1|DV519825
EST:     GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG                         TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: gi|67010369|gb|CO439118.1|CO439118
EST:     GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG                         TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: gi|149045355|gb|EE047779.2|EE047779
EST:     GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG                         TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: gi|86468327|gb|DY234697.1|DY234697
EST:     GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCCCCCGTAGTG                         TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: gi|87156323|gb|DY401112.1|DY401112
EST:     GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG                         TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: gi|71313249|gb|DR793148.1|DR793148
EST:     GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG                         TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: gi|211324976|gb|FL012745.1|FL012745
EST:     GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG                         TGGCCTGGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCA
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTG-TTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCA
EST: gi|76016277|gb|DT943447.1|DT943447
EST:     GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG                         TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: gi|78113031|gb|DV531425.1|DV531425
EST:     GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG                         TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG