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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGGGGCGAGAGAGACCTCCGAGTCCCAGAAGGAAGACTACATTCATGTCCGAGCTCGGCGCGGACAGGCAACCAACAGCCACAGCCTAGCAGAAAGGgtacggatttgatcaacgggtggcatccccgtgtttaccgtctgctgtggatcgcggtctggaattcacaccccaatgtttaaccctgcttgctgcgtctttttttctctgcag

Basic information

species Zea mays
transcript GRMZM5G818643_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G818643_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g29830.2 (Oryza sativa), 5'ss of exon 2
AAAGGGGGCGAGAGAGACCTCCGAGTCCCAGAAGGAAGACTACATTCATGTCCGAGCTCGGCGCGGACAGGCAACCAACAGCCACAGCCTAGCAGAAAGGgtacggatttgatcaacgggtggcatccccgtgtttaccgtctgctgtg-gatcgcggtctggaattcacaccccaatgtttaaccctgcttgctgcgtctttttttctctgcag
 ||||| || |  |||||||| ||||| ||||| ||||| |||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||  |||| |          |  | |  || |  || || |||| ||  || |   || | |  |   | |  | | ||| ||  | | || |||                  
GAAGGGAGCAAAGGAGACCTCTGAGTCACAGAAAGAAGAGTACATTCATGTCCGGGCTCGGCGTGGCCAGGCAACCAACAGCCACAGCTTAGCAGAAAGGgtacatatttca----------gtgttctagtatggacagtatgctttgcaattggcatcagtacgttgaaactgagtattttacgtttcgtg-tgcag----------------

upper sequence: GRMZM5G818643_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S145_69V6.1 (Physcomitrella patens), 5'ss of exon 2
-----AAAGGGGGCGAGAGAGACCTCCGAGTCCCAGAAGGAAGACTACATTCATGTCCGAGCTCGGCGCGGACAGGCAACCAACAGCCACAGCCTAGCAGAAAGGgtacggatttgatcaacgggtggcatccccg--------tgtttaccgtctgctgtggatcgcggtctggaattcacaccccaatgtttaaccctgcttgctgcg--------tctttttttctctgcag
       |     ||| | | |  ||    | |||  || | |||||||||||||| |||||||| || ||||| || ||| ||||||||||||| || |||||||||             |  ||  | | | ||         | ||     |  |      | |   |||| | |   ||| |   | | || | || | ||  | |        | || |   |||  |||
AGACTCGAATAACCGAAACAAAATTCT---TTCCA--AGCAGGACTACATTCATGTGCGAGCTCGACGAGGACAAGCCACCGACAGCCACAGCCTTGCGGAAAGGgtaaaatcccagatcccaagtttccttctcgattcgattcgattcataacctcaactattagtattctgaactcgtcacacatctctgtagcactccctgacgtgagtcatcatgttgtacgctcctcag