1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATTCCTTGCTCTATACAGGGCTGCTACTATCTCCTTTCATGTTGTAAAACTCACTATTTGGCATTTGTTGCTCAATGATATGCATAAAAGAGCAGAAAAGgtagttttcctgactttgttggtggaggaactgagcatcatgtctctgattatcatttccttatttcag
species | Zea mays |
transcript | GRMZM5G817551_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCACTATTTGGCATTTGTTGCTCAATGATATGCATAAAAGAGCAGAAAAG TTTCGAGAGACCTTGATACGCTTGGGTCCTTTTTATATCAAGEST: gi|71314002|gb|DR793613.1|DR793613
genomic: TCACTATTTGGCATTTGTTGCTCAATGATATGCATAAAAGAGCAGAAAAGgtagttttcc ... cttatttcagTTTCGAGAGACCTTGATACGCTTGGGTCCTTTTTATATCAAG
EST: TCACTATTTGGCATTTGTTGCTCAATGATATGCATAAAAGAGCAGAAAAG TTTCGAGAGACCTTGATACGCTTGGGTCCTTTTTATATCAAGEST: gi|101388188|gb|EB816108.1|EB816108
genomic: TCACTATTTGGCATTTGTTGCTCAATGATATGCATAAAAGAGCAGAAAAGgtagttttcc ... cttatttcagTTTCGAGAGACCTTGATACGCTTGGGTCCTTTTTATATCAAG
EST: TCACTATTTGGCATTTGTTGCTCAATGATATGCATAAAAGAGCAGAAAAG TTTCGAGAGACCTTGATACGCTTGGGTCCTTTTTATATCAAG
genomic: TCACTATTTGGCATTTGTTGCTCAATGATATGCATAAAAGAGCAGAAAAGgtagttttcc ... cttatttcagTTTCGAGAGACCTTGATACGCTTGGGTCCTTTTTATATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCCTTGCTCTATACAGGGCTGCTACTATCTCCTTTCATGTTGTAAAACTCACTATTTGGCATTTGTTGCTCAATGATATGCATAAAAGAGCAGAAAAGgtagttttcctgactttgttggtggaggaactgagcatcatgtctctgattatcatttccttatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG