ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

TGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACACCCGCCTCTCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtccccggacccaatcgcgtgcttcgatctgcccgtctgggctttagggtttgtggattgcgagacacgagtgggattttggtatagcgcgggctc...

Basic information

species	Zea mays
transcript	GRMZM5G817037_T02
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM5G817037_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g32800.2 (Oryza sativa), 5'ss of exon 2

TGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACACCCGCCTCTCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtccccggacccaatcgcgtgcttcgatctgcccgtctgggctttagggtttgtggattgcgagacacgagtgggattttggtatagcgcgggctc--
|||||||||||||||| || ||||| || || || || || |||||||| || || |||||||  ||||||||||| || ||||||||||||||||| |||| ||||||  | || |||||||  |  |||||||||||  | ||  ||||||||||| ||||| |||    | ||||| || || |       ||  ||  
TGGCCATCGCCGGCGCGGACTACTGCGTGGTGGCCGCCGATACCCGCCTTTCCGTCGGATACAACATCCTCACGCGCGACCACTCCAAGATCTGCGAGCTgtaagtccc--ggccgaatcgcggcccccgatctgcccgctttgggcttagggtttgttgattgggagggctgtgtgggtttgtgatgcgcttgggagtcga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|78118564|gb|DV536948.1|DV536948

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211289621|gb|FL244434.1|FL244434

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211149992|gb|FL260584.1|FL260584

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|71433501|gb|DR814551.1|DR814551

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211287471|gb|FL244413.1|FL244413

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211291759|gb|FL244447.1|FL244447

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|149105264|gb|EE290754.2|EE290754

EST:     ATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: ATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211291754|gb|FL244442.1|FL244442

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211289620|gb|FL244433.1|FL244433

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211291758|gb|FL244446.1|FL244446

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211287474|gb|FL244416.1|FL244416

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211302464|gb|FL244526.1|FL244526

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211289613|gb|FL244426.1|FL244426

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211402444|gb|FL244547.1|FL244547

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211291762|gb|FL244450.1|FL244450

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTG
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTG

EST: gi|148953910|gb|EC899291.2|EC899291

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211396164|gb|FL318371.1|FL318371

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211399899|gb|FL244535.1|FL244535

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211287479|gb|FL244421.1|FL244421

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211399902|gb|FL244538.1|FL244538

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211296046|gb|FL244480.1|FL244480

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211302455|gb|FL244517.1|FL244517

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211287475|gb|FL244417.1|FL244417

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211300324|gb|FL244509.1|FL244509

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211291764|gb|FL244452.1|FL244452

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211296047|gb|FL244481.1|FL244481

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211302462|gb|FL244524.1|FL244524

EST:     TCTGTAGTATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211293897|gb|FL244457.1|FL244457

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211399903|gb|FL244539.1|FL244539

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|85152368|gb|DW587710.1|DW587710

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|33942254|gb|CF348854.1|CF348854

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211399907|gb|FL244543.1|FL244543

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211287480|gb|FL244422.1|FL244422

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211296040|gb|FL244474.1|FL244474

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211427862|gb|FL460786.1|FL460786

EST:     GCGTGATCACTCCAAGATCTGCCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGG
genomic: GCGTGATCACTCCAAGATCTG-CGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGG

EST: gi|211289617|gb|FL244430.1|FL244430

EST:     TCTGTAGGATACAKTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|7009428|gb|AW455693.1|AW455693

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211302461|gb|FL244523.1|FL244523

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211296041|gb|FL244475.1|FL244475

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGANAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|116817176|gb|EC859993.1|EC859993

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211289618|gb|FL244431.1|FL244431

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211289627|gb|FL244440.1|FL244440

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211300320|gb|FL244505.1|FL244505

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211293905|gb|FL244465.1|FL244465

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211399897|gb|FL244533.1|FL244533

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATT
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATT

EST: gi|211296049|gb|FL244483.1|FL244483

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211302456|gb|FL244518.1|FL244518

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTMAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211399904|gb|FL244540.1|FL244540

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|149105265|gb|EE290755.2|EE290755

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211293898|gb|FL244458.1|FL244458

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211289626|gb|FL244439.1|FL244439

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGS
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211296048|gb|FL244482.1|FL244482

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGAT
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGAT

EST: gi|148930814|gb|EC873185.2|EC873185

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211291763|gb|FL244451.1|FL244451

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|91868767|gb|EB400150.1|EB400150

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211300330|gb|FL244515.1|FL244515

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211298177|gb|FL244489.1|FL244489

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211296045|gb|FL244479.1|FL244479

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|71433723|gb|DR814773.1|DR814773

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|71316983|gb|DR795175.1|DR795175

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211291765|gb|FL244453.1|FL244453

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211300317|gb|FL244502.1|FL244502

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|148965093|gb|EE015910.2|EE015910

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211298175|gb|FL244487.1|FL244487

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211289616|gb|FL244429.1|FL244429

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211296050|gb|FL244484.1|FL244484

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATG
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATG

EST: gi|211298184|gb|FL244496.1|FL244496

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211289614|gb|FL244427.1|FL244427

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|31356308|gb|CD440665.1|CD440665

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

EST: gi|211302468|gb|FL244530.1|FL244530

EST:     TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCT                         GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC
genomic: TCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 343

TGGCCATCGCCGGCGCTGATTACTGTGTCGTCGCTGCGGACACCCGCCTCTCTGTAGGATACAGTATCCTCACGCGTGATCACTCCAAGATCTGCGACCTgtgagtcccc ... atgtgtgtagGGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 455

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 422