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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGATTCTCTTTTTTCTATTTGAGTTCTATGATGATCAATTGCTTGCGTTTCTTGTTTTGACTCTTGTATGGTTATGCGAGCTATTCACGATGATCAGgtaatggtttacatggaagtattactggattttttattatactctactcctgatgtgaaacacctacccttttagagaattcactgtttcatacaaattc...

Basic information

species Zea mays
transcript GRMZM5G814310_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G814310_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g45770.2 (Oryza sativa), 5'ss of exon 10
TTGGGATTCTCTTTTTTCTATTTGAGTTCTATGATGATCAATTGCTTGCGTTTCTTGTTTTGACTCTTGTATGGTTATGCGAGCTATTCACGATGATCAGgtaatggtttacatggaagtattactggattttttattatactctactcctgatgtgaaacacctaccctttta-gagaattcactgtttcatacaaattc---------
||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| || |||||||| |||||||||||||| || ||| |||  |  |||| |||||         || || ||||  |     |||| ||        | | | ||  |  ||||    |  |   ||         
TTGGGATCCTCTTTTTTCTATTTGAGTTCTATGATGATCAGTTGCTTGCATTTCTAGTTTTGACTCTTGTATGGTTGTGTGAGCTATTTACGATGATCAGgtactg-tttccatatacatattgctgga---------atgctttactatttcgaggaaatactattttaatcatgtgagatttctgtgctgtgaagcgtctgtcctact
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71435715|gb|DR816765.1|DR816765
EST:     TTTCTTGTTTTGACTCTTGTATGGTTATGCGAGCTATTCACGATGATCAG                         TGTGCGGACATCCATATCGATGCAGTTCTTTCCACGCTTCTTCTTGCTGTA
genomic: TTTCTTGTTTTGACTCTTGTATGGTTATGCGAGCTATTCACGATGATCAGgtaatggttt ... tgcttttcagTGTGCGGACATCCATATCGATGCAGTTCTTTCCACGCTTCTTCTTGCTGTA