1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTGGGATTCTCTTTTTTCTATTTGAGTTCTATGATGATCAATTGCTTGCGTTTCTTGTTTTGACTCTTGTATGGTTATGCGAGCTATTCACGATGATCAGgtaatggtttacatggaagtattactggattttttattatactctactcctgatgtgaaacacctacccttttagagaattcactgtttcatacaaattc...
species | Zea mays |
transcript | GRMZM5G814310_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTATTCACGATGATCAG TGTGCGGACATCCATATCGATGCAGTTCTTTCCACGCTTCTTCTTGCTGTAEST: gi|211054879|gb|FL422556.1|FL422556
genomic: CTATTCACGATGATCAGgtaatggttt ... tgcttttcagTGTGCGGACATCCATATCGATGCAGTTCTTTCCACGCTTCTTCTTGCTGTA
EST: CTATTCACGATGATCAG TGTGCGGACATCCATATCGATGCAGTTCTTTCCACGCTTCTTCTTGCTGTAEST: gi|211393234|gb|FL418031.1|FL418031
genomic: CTATTCACGATGATCAGgtaatggttt ... tgcttttcagTGTGCGGACATCCATATCGATGCAGTTCTTTCCACGCTTCTTCTTGCTGTA
EST: CTATTCACGATGATCAG TGTGCGGACATCCATATCGATGCAGTTCTTTCCACGCTTCTTCTTGCTGTAEST: gi|67010774|gb|CO439523.1|CO439523
genomic: CTATTCACGATGATCAGgtaatggttt ... tgcttttcagTGTGCGGACATCCATATCGATGCAGTTCTTTCCACGCTTCTTCTTGCTGTA
EST: TTTCTTGTTTTGACTCTTGTATGGTTATGCGAGCTATTCACGATGATCAG TGTGCGGACATCCATATCGATGCAGTTCTTTCCACGCTTCTTCTTGCTGTA
genomic: TTTCTTGTTTTGACTCTTGTATGGTTATGCGAGCTATTCACGATGATCAGgtaatggttt ... tgcttttcagTGTGCGGACATCCATATCGATGCAGTTCTTTCCACGCTTCTTCTTGCTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGGATTCTCTTTTTTCTATTTGAGTTCTATGATGATCAATTGCTTGCGTTTCTTGTTTTGACTCTTGTATGGTTATGCGAGCTATTCACGATGATCAGgtaatggtttacatggaagtattactggattttttattatactctactcctgatgtgaaacacctacccttttagagaattcactgtttcatacaaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacctacc