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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGAATGACATCGTTGACAAGTACAGTACACATTCTAAGAATCTGGGGAAATCACATCAGCAGCCTTCTATTGATTTGAATgtatgttatgttagcaatatttttccttttttctttccttgaacttttcttactaataggcaatagtgtaaagcacttttacaggaaagacagatgttaa...

Basic information

species Zea mays
transcript GRMZM5G814279_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60359649|gb|DN226622.1|DN226622
EST:     TTGATTTGAAT                         GTAGAGCAGAGCAAATACAGCGGCTTGAACGAGCAACTTGCTGAAGAAACT
genomic: TTGATTTGAATgtatgttatg ... aatttttcagGTAGAGCAGAGCAAATACAGCGGCTTGAACGAGCAACTTGCTGAAGAAACT
EST: gi|91871952|gb|EB401909.1|EB401909
EST:     ATTCTAAGAATCTGGGGAAATCATATCAGCAGCCTTCTATTGATTTGAAT                         GTAGAGCAGAGCAAATACAGCGGCTTGAACGAGCAACTTGCTGAAGAAACT
genomic: ATTCTAAGAATCTGGGGAAATCACATCAGCAGCCTTCTATTGATTTGAATgtatgttatg ... aatttttcagGTAGAGCAGAGCAAATACAGCGGCTTGAACGAGCAACTTGCTGAAGAAACT
EST: gi|71312209|gb|DR792627.1|DR792627
EST:     ATTCTAAGAATCTGGGGAAATCACATCAGCAGCCTTCTATTGATTTGAAT                         GTAGAGCAGAGCAAATACAGCGGCTTGAACGAGCAACTTGCTGAAGAAACT
genomic: ATTCTAAGAATCTGGGGAAATCACATCAGCAGCCTTCTATTGATTTGAATgtatgttatg ... aatttttcagGTAGAGCAGAGCAAATACAGCGGCTTGAACGAGCAACTTGCTGAAGAAACT
EST: gi|32938638|gb|CF043457.1|CF043457
EST:     ATTCTAAGAATCTGGGGAAATCACATCAGCAGCCTTCTATTGATTTGAAT                         GTAGAGCAGAGCAAATACAGCGGCTTGAACGAGCAACTTGCTGAAGAAACT
genomic: ATTCTAAGAATCTGGGGAAATCACATCAGCAGCCTTCTATTGATTTGAATgtatgttatg ... aatttttcagGTAGAGCAGAGCAAATACAGCGGCTTGAACGAGCAACTTGCTGAAGAAACT
EST: gi|60355305|gb|DN222278.1|DN222278
EST:     ATTCTAAGAATCTGGGGAAATCACATCAGCAGCCTTCTATTGATTTGAAT                         GTAGAGCAGAGCAAATACAGCGGCTTGAACGAGCAACTTGCTGAAGAAACT
genomic: ATTCTAAGAATCTGGGGAAATCACATCAGCAGCCTTCTATTGATTTGAATgtatgttatg ... aatttttcagGTAGAGCAGAGCAAATACAGCGGCTTGAACGAGCAACTTGCTGAAGAAACT