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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGAGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACTgtaagtgctgtcgatcgaggattttttttttctgattcactgataactggcatgactgaacattgtttatatctcgctgttcccaattggcttgggcag

Basic information

species Zea mays
transcript GRMZM5G813363_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G813363_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g10740.1 (Oryza sativa), 5'ss of exon 2
GATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGAGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACTgtaagtgctgtcgatcgaggattttttttttctgattcactgataactggcatgactgaacattgtttat-atctcgctgttcccaattggcttgggcag
|| ||||  |||||||||||||| |||||  || |||| ||  | |||||||||||||||||||| ||||| || |||||||||||  | ||  ||||| || |||     | |       |    || ||   |  ||  |   | | |           ||  | ||| ||  | |  |||   ||| || ||  |||
GAGCATCAAGTGAGGACGAGATGCGGTTCATTATCCGTCGCGATATACGGAGACGAGGACAAGCCGGCGCTCATCACGTACCCGGACATCGCGTTGAACCgtgagtaacaaccacatctcgtgagattcttggaagacatggtagaattgggaattcatcgatcatatatgattacccatttcttgatttgcatg--cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91872830|gb|EB402787.1|EB402787
EST:     AGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACT                         ACCTGTCCTGTTTCCAAGCATTTTTCTTCTGCCCGGAAGTGGCGTCTTTGC
genomic: AGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACTgtaagtgctg ... gcttgggcagACCTGTCCTGTTTCCAAGCATTTTTCTTCTGCCCGGAAGTGGCGTCTTTGC
EST: gi|101391594|gb|EB817733.1|EB817733
EST:     AGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACT                         ACCTGTCCTGTTTCCAAGCATTTTTCTTCTGCCCGGAAGTGGCGTCTTTGC
genomic: AGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACTgtaagtgctg ... gcttgggcagACCTGTCCTGTTTCCAAGCATTTTTCTTCTGCCCGGAAGTGGCGTCTTTGC
EST: gi|101387839|gb|EB815934.1|EB815934
EST:     AGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACT                         ACCTGTCCTGTTTCCAAGCATTTTTCTTCTGCCCGGAAGTGGCGTCTTTGC
genomic: AGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACTgtaagtgctg ... gcttgggcagACCTGTCCTGTTTCCAAGCATTTTTCTTCTGCCCGGAAGTGGCGTCTTTGC
EST: gi|71322272|gb|DR797821.1|DR797821
EST:     AGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACT                         ACCTGTCCTGTTTCCAAGCATTTTTCTTCTGCCCGGAAGTGGCGTCTTTGC
genomic: AGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACTgtaagtgctg ... gcttgggcagACCTGTCCTGTTTCCAAGCATTTTTCTTCTGCCCGGAAGTGGCGTCTTTGC
EST: gi|91047989|gb|EB158407.1|EB158407
EST:     AGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACT                         ACCTGTCCTGTTTCCAAGCATTTTTCTTCTGCCCGGAAGTGGCGTCTTTGC
genomic: AGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACTgtaagtgctg ... gcttgggcagACCTGTCCTGTTTCCAAGCATTTTTCTTCTGCCCGGAAGTGGCGTCTTTGC
EST: gi|88749046|gb|DY533187.1|DY533187
EST:     AGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACT                         ACCTGTCCTGTTTCCAAGCTTTTTTCTTCTGCCCGGAAGTGGCGTCTTTGC
genomic: AGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACTgtaagtgctg ... gcttgggcagACCTGTCCTGTTTCCAAGCATTTTTCTTCTGCCCGGAAGTGGCGTCTTTGC