1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGGATCGACATAATCAAGCACGCGTTTGAGGCCGGCATCACCTTCTTCGACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacattctgaatccagtcgagtgatgtttgtatgtctgattggtctggagcctggaggccggtggaattcaactaggatagacaagaatgttgat...
species | Zea mays |
transcript | GRMZM5G813143_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|211148661|gb|FL386504.1|FL386504
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|211093061|gb|FL420432.1|FL420432
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|211059839|gb|FL382527.1|FL382527
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|74244513|gb|DT652427.1|DT652427
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|211448350|gb|FL416391.1|FL416391
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|37421025|gb|CF648209.1|CF648209
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|211319782|gb|FL419331.1|FL419331
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|211232220|gb|FL409286.1|FL409286
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|88756482|gb|DY540623.1|DY540623
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTAAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|91873437|gb|EB403394.1|EB403394
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|89755225|gb|DY685734.1|DY685734
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|78112032|gb|DV530428.1|DV530428
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|211496817|gb|FL406830.1|FL406830
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGKGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACGATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGEST: gi|88757821|gb|DY541962.1|DY541962
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAAC-ATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGG
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|76021184|gb|DT948354.1|DT948354
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|211212953|gb|FL427987.1|FL427987
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|78085303|gb|DV513696.1|DV513696
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|76288052|gb|DV027620.1|DV027620
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|91055988|gb|EB166406.1|EB166406
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|211358031|gb|FL393768.1|FL393768
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|88747189|gb|DY531330.1|DY531330
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAAAAGGTGCAATTTGCCACCAAATGTGGCEST: gi|91877299|gb|EB407256.1|EB407256
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|211534021|gb|FL424331.1|FL424331
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|74244046|gb|DT651960.1|DT651960
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|211247446|gb|FL396985.1|FL396985
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|89762828|gb|DY690268.1|DY690268
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|211368675|gb|FL393825.1|FL393825
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|89761102|gb|DY689251.1|DY689251
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|78087084|gb|DV515477.1|DV515477
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|101392434|gb|EB818146.1|EB818146
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|60396606|gb|DN229475.1|DN229475
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|91875443|gb|EB405400.1|EB405400
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGCEST: gi|211437107|gb|FL416888.1|FL416888
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
EST: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAG GCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
genomic: ACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacat ... ggttgtacagGCATTGAAACATTTTCCTCGTGAGAAGGTGCAAATTGCCACCAAATGTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGATCGACATAATCAAGCACGCGTTTGAGGCCGGCATCACCTTCTTCGACACCGCTGATGCCTATGGGCCACACACCAACGAGGTCCTGCTCGGAAAGgtaaaaacattctgaatccagtcgagtgatgtttgtatgtctgattggtctggagcctggaggccggtggaattcaactaggatagacaagaatgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT