Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctcgttgtgcgtaacttgcacagatcgctgcctgataacttcttgcactctgggatttgtatttgacatctgaaacccgcgcttggtctctgatccggtgtcagttaggcgcactcactctcatctcacagaatgtttccttttattggtgttggctgatcag

Basic information

species Zea mays
transcript GRMZM5G812553_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G089860_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g03400.2 (Oryza sativa), 5'ss of exon 2
GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctcgttgtgcgtaacttgcacagatcgctgcctgataacttcttgcactctgggatttgtatttgacatctgaaacccgcgcttggtctctgatccg-gtgtcagttaggcgcactcactctcatctcacagaatgtttccttttattggtgttggctgatcag
||||||||||||||||||| || |||||||||||| |||| ||||  |||||||||||| |||||||||| ||| | ||||| | |       || |  |  |  ||||| |||  |  || | || || ||   || |  || | |||   | ||| |||     ||||  || |||||   ||  | || || |      ||||      || |||||||    ||| ||||| |||  |||||||
GCGCCAATGGCCGCACGGGCAACCAGTGGAAGCAGCTGCTCCCGCACCTCCGCACCCGCTTCGCTGACCAATGCGATgtaagacttt------cg-atttctcttagatccctggatcgtagcatcctgaacc--ggaagctgcaattgctgtatgagacc-atatttgggatcagatccccatgctaatttgggg-----gctct------acggaatgttctgatttgttggtattgcgtgatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78075654|gb|DV504088.1|DV504088
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|40334416|gb|CK368486.1|CK368486
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|50336722|gb|CO531848.1|CO531848
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|71764065|gb|DR962002.1|DR962002
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211467175|gb|FK976084.1|FK976084
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|91878207|gb|EB408164.1|EB408164
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|76285904|gb|DV025472.1|DV025472
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|89759547|gb|DY688342.1|DY688342
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211469692|gb|FK976089.1|FK976089
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211469691|gb|FK976088.1|FK976088
EST:     GGAAGCAGTTGCCGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCGTCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|30307231|gb|CD001904.1|CD001904
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|149080870|gb|EE169951.2|EE169951
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211467172|gb|FK976081.1|FK976081
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211469695|gb|FK976092.1|FK976092
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|93281461|gb|EB673725.1|EB673725
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211469693|gb|FK976090.1|FK976090
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCGTCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|76021472|gb|DT948642.1|DT948642
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|27522138|gb|CA989244.1|CA989244
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|148976019|gb|EE025878.2|EE025878
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|50322460|gb|CO517586.1|CO517586
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|30087318|gb|CB885526.1|CB885526
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|71774560|gb|DR972438.1|DR972438
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|91051589|gb|EB162007.1|EB162007
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|78085115|gb|DV513508.1|DV513508
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|78078210|gb|DV506625.1|DV506625
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|91878508|gb|EB408465.1|EB408465
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACCAAG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCAC-AAG
EST: gi|78105462|gb|DV523880.1|DV523880
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|71436209|gb|DR817259.1|DR817259
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|67022745|gb|CO451494.1|CO451494
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAATG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|50339595|gb|CO534721.1|CO534721
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCACGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|91873291|gb|EB403248.1|EB403248
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|91050474|gb|EB160892.1|EB160892
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|78113487|gb|DV531878.1|DV531878
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|33467744|gb|CF244793.1|CF244793
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211469689|gb|FK976086.1|FK976086
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|40335239|gb|CK369309.1|CK369309
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|78121935|gb|DV540319.1|DV540319
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|71298751|gb|DR785364.1|DR785364
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211467171|gb|FK976080.1|FK976080
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211467174|gb|FK976083.1|FK976083
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCGTCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211469696|gb|FK976093.1|FK976093
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|31363680|gb|CD448037.1|CD448037
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|71436272|gb|DR817322.1|DR817322
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|38687767|gb|CK144798.1|CK144798
EST:     GGAAGCAGTTGCTGCCGATTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAATG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|30087080|gb|CB885288.1|CB885288
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGCCAATGGCCGCACGGGAAAGCAGTGGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctcgttgtgcgtaacttgcacagatcgctgcctgataacttcttgcactctgggatttgtatttgacatctgaaacccgcgcttggtctctgatccggtgtcagttaggcgcactcactctcatctcacagaatgtttccttttattggtgttggctgatcag

- - - - - - - - - - - - - - - - - - TGCTGC