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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTGTGGATTGGATTGCTAGCTACCGAACAAGCCCTCAGCGTGCTAATTTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctacatttcatttccatattgtttattcttcaaataggtcaaaaaattctgattctccatgcctccctcctgttattctgagttctgaacagattctttttcgatatgcag

Basic information

species Zea mays
transcript GRMZM5G808737_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211066096|gb|FL065386.1|FL065386
EST:     TTCAGTGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|211068839|gb|FL065399.1|FL065399
EST:     TTCAGTGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTA
EST: gi|148971778|gb|EE022513.2|EE022513
EST:     TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|148947961|gb|EC893460.2|EC893460
EST:     TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|50339378|gb|CO534504.1|CO534504
EST:     TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|211068832|gb|FL065392.1|FL065392
EST:     TTCAGTGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|211066097|gb|FL065387.1|FL065387
EST:     TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|50322814|gb|CO517940.1|CO517940
EST:     TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|211068836|gb|FL065396.1|FL065396
EST:     TTCAGTGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|211068831|gb|FL065391.1|FL065391
EST:     TTCAGTGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTG
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTG
EST: gi|211066098|gb|FL065388.1|FL065388
EST:     TTCAGTGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|211068840|gb|FL065400.1|FL065400
EST:     TTCAGTGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATCCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|211068841|gb|FL065401.1|FL065401
EST:     TTCAGTGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATNCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|211068842|gb|FL065402.1|FL065402
EST:     TTCAGTGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATGCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|211068837|gb|FL065397.1|FL065397
EST:     TTCAGTGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|9733110|gb|BE511862.1|BE511862
EST:     TTCAGTGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|211068830|gb|FL065390.1|FL065390
EST:     TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|74235722|gb|DT643636.1|DT643636
EST:     TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|211068838|gb|FL065398.1|FL065398
EST:     TTCAGTGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCKTCTCACACTGAGTTGCCAGTTTATTCCG
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTC-TCTCACACTGAGTTGCCAGTTTATTCCG
EST: gi|211068833|gb|FL065393.1|FL065393
EST:     TTCAGTGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|211068835|gb|FL065395.1|FL065395
EST:     TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
EST: gi|211066095|gb|FL065385.1|FL065385
EST:     TTCAGTGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAG                         TTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA
genomic: TTCAATGGAATCTTGGTAGACACCACTGAACTTCTTGGTTTCCAATTAAGgtgcgcctac ... cgatatgcagTTCGAGCATAGAGATCGTCTTCTCTCACACTGAGTTGCCAGTTTATTCCGA