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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCACGGCCCAGGCGGTCTCCAACCCGGCGCTGCAGCCGCTCCACAGGGACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCGgtctgtcgttgcctgtttttgtttgtttgttttttttttttcaaacacaatgctgcgccgcggatcgaattgtattattgtacgactgccgggcccgtcgatcgatgtgtctccaataatttctccgccggtgcatgatgcacgcag

Basic information

species Zea mays
transcript GRMZM5G807267_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89758326|gb|DY687544.1|DY687544
EST:     ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCG                         CTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
genomic: ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCGgtctgtcgtt ... atgcacgcagCTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
EST: gi|148933555|gb|EC877415.2|EC877415
EST:     ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCG                         CTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
genomic: ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCGgtctgtcgtt ... atgcacgcagCTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
EST: gi|74244873|gb|DT652787.1|DT652787
EST:     ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCG                         CTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
genomic: ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCGgtctgtcgtt ... atgcacgcagCTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
EST: gi|76288688|gb|DV028256.1|DV028256
EST:     ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCG                         CTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
genomic: ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCGgtctgtcgtt ... atgcacgcagCTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
EST: gi|50324602|gb|CO519728.1|CO519728
EST:     ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCG                         CTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
genomic: ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCGgtctgtcgtt ... atgcacgcagCTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
EST: gi|76014111|gb|DT941281.1|DT941281
EST:     ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCG                         CTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
genomic: ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCGgtctgtcgtt ... atgcacgcagCTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
EST: gi|71417345|gb|DR804018.1|DR804018
EST:     ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCATCAACGTCGCG                         CTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
genomic: ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCGgtctgtcgtt ... atgcacgcagCTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
EST: gi|74239799|gb|DT647713.1|DT647713
EST:     ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCG                         CTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
genomic: ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCGgtctgtcgtt ... atgcacgcagCTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
EST: gi|71316204|gb|DR794778.1|DR794778
EST:     ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCG                         CTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG
genomic: ACTACACCGTGGCCAACGCCACCCTCGTCGACAACGTCGTCAACGTCGCGgtctgtcgtt ... atgcacgcagCTGCGCTTCGACGGCGACGGCGGCGCCGGGAGCGTGAGCGTCGGCGGGAAG