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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGACTTGTCAGAACCATAACCAATGTTGGGCATCAAGGTGCATCCCTTGAACTTCCTCCTGACACGGGAGTCAATACCCTTTGGCCTGCGCCAGCTTGGctgtacaaagaatcaacaagtcagaacttagaattactctatggagggaaataaatacaaagaaatggtataagaaaaacaagctcaatagatgtctgca...

Basic information

species Zea mays
transcript GRMZM5G803927_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211530927|gb|FL079614.1|FL079614
EST:     AACTTCCTCCTGACACGGGAATCAATACCCTTTGGCCTGCGCCAGCTTGG                         CTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAACTGCTTGACCCG
genomic: AACTTCCTCCTGACACGGGAGTCAATACCCTTTGGCCTGCGCCAGCTTGGctgtacaaag ... agattcaaacCTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAACTGCTTGACCCG
EST: gi|211530921|gb|FL079608.1|FL079608
EST:     AACTTCCTCCTGACACGGGAATCAATACCCTTTGGCCTGCGCCAGCTTGG                         CTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAACTGCTTGACCCG
genomic: AACTTCCTCCTGACACGGGAGTCAATACCCTTTGGCCTGCGCCAGCTTGGctgtacaaag ... agattcaaacCTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAACTGCTTGACCCG
EST: gi|29167883|gb|CB411143.1|CB411143
EST:     AACTTCCTCCTGACACGGGAGTCAATACCCTTTGGCCTGCGCCAGCTTGG                         CTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAACTGCTTGACCCG
genomic: AACTTCCTCCTGACACGGGAGTCAATACCCTTTGGCCTGCGCCAGCTTGGctgtacaaag ... agattcaaacCTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAACTGCTTGACCCG
EST: gi|14569245|gb|BI097568.1|BI097568
EST:     AACTTCCTCCTGACACGGGAATCAATACCCTTTGGCCTGCGCCAGCTTGG                         CTTAAGGCACTTGTAGCGGTCGAGGTGGGGC
genomic: AACTTCCTCCTGACACGGGAGTCAATACCCTTTGGCCTGCGCCAGCTTGGctgtacaaag ... agattcaaacCTTAAGGCACTTGTAGCGGTCGAGGTGGGGC
EST: gi|211196434|gb|FL256390.1|FL256390
EST:     AACTTCCTCCTGACACGGGAGTCAATACCCTTTGGCCTGCGCCAGCTTGG                         CTTAAGGCACTTGTAGCGGTCGAGGTG
genomic: AACTTCCTCCTGACACGGGAGTCAATACCCTTTGGCCTGCGCCAGCTTGGctgtacaaag ... agattcaaacCTTAAGGCACTTGTAGCGGTCGAGGTG
EST: gi|92088057|gb|EB484288.1|EB484288
EST:     AACTTCCTCCTGACACGGGAATCAATACCCTTTGGCCTGCGCCAGCTTGG                         CTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAACTGCTTGACCCG
genomic: AACTTCCTCCTGACACGGGAGTCAATACCCTTTGGCCTGCGCCAGCTTGGctgtacaaag ... agattcaaacCTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAACTGCTTGACCCG
EST: gi|211044025|gb|FL231327.1|FL231327
EST:     AATTTCCTCCTGACACGGGAATCAATACCCTTTGGCCTGCGCCAGCTTGG                         CTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAACTGCTTGACCCG
genomic: AACTTCCTCCTGACACGGGAGTCAATACCCTTTGGCCTGCGCCAGCTTGGctgtacaaag ... agattcaaacCTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAACTGCTTGACCCG
EST: gi|211399558|gb|FL231189.1|FL231189
EST:     AACTTCCTCCTGACACGGGAATCAATACCCTTTGGCCTGCGCCAGCTTGG                         CTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAACTGCTTGACCCG
genomic: AACTTCCTCCTGACACGGGAGTCAATACCCTTTGGCCTGCGCCAGCTTGGctgtacaaag ... agattcaaacCTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAACTGCTTGACCCG
EST: gi|211285282|gb|FL231180.1|FL231180
EST:     AACTTCCTCCTGACACGGGAATCAATACCCTTTGGCCTGCGCCAGCTTGG                         CTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAACTGCTTGACCCG
genomic: AACTTCCTCCTGACACGGGAGTCAATACCCTTTGGCCTGCGCCAGCTTGGctgtacaaag ... agattcaaacCTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAACTGCTTGACCCG
EST: gi|29130397|gb|CB381101.1|CB381101
EST:     AACTTCCTCCTGACACGGGAGTCAATACCCTTTGGCCTGCGCCAGCTTGG                         CTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAGCTGCTTGACCCG
genomic: AACTTCCTCCTGACACGGGAGTCAATACCCTTTGGCCTGCGCCAGCTTGGctgtacaaag ... agattcaaacCTTAAGGCACTTGTAGCGGTCGAGGTGGGGCCTCTTGAACTGCTTGACCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGACTTGTCAGAACCATAACCAATGTTGGGCATCAAGGTGCATCCCTTGAACTTCCTCCTGACACGGGAGTCAATACCCTTTGGCCTGCGCCAGCTTGGctgtacaaagaatcaacaagtcagaacttagaattactctatggagggaaataaatacaaagaaatggtataagaaaaacaagctcaatagatgtctgca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaaa