1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGACTTCTCCGAACCTCCTGTCCTCCATACCGGCGCTCCTACCCTCGCTGCAATGGAGTTGAGGAGGCCTGCGCCCTCTCCTCTCGTCGACAACTACGTGgtaaatcttccagccctattccgcaccttgatctctcacttgtgctatctgtgccgatctggtcatcacctcacactgcccaccatggtcag
species | Zea mays |
transcript | GRMZM5G802854_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AATGGAGTYGAGGAAGGCCTGCGCCCTCTCCTCTCGTCGACAACTACGTG GTACCCTGGTGATGTCGTCCTGGACCTCTEST: gi|71434798|gb|DR815848.1|DR815848
genomic: AATGGAGTTGAGGA-GGCCTGCGCCCTCTCCTCTCGTCGACAACTACGTGgtaaatcttc ... ccatggtcagGTACC-TGGTGATGTCGTCCTGGACCTCT
EST: CAATGGAGTTGAGGAGGCCTGCGCCCTCTCCTCTCGTCGACAACTACGTG GTACCTGGTGATGTCGTCCTGGACCTCTCCGAGATGAACAACCAGACCATTEST: gi|71433727|gb|DR814777.1|DR814777
genomic: CAATGGAGTTGAGGAGGCCTGCGCCCTCTCCTCTCGTCGACAACTACGTGgtaaatcttc ... ccatggtcagGTACCTGGTGATGTCGTCCTGGACCTCTCCGAGATGAACAACCAGACCATT
EST: CAATGGAGTTGAGGAGGCCTGCGCCCTCTCCTCTCGTCGACAACTACGTG GTACCTGGTGATGTCGTCCTGGACCTCTCCGAGATGAACAACCAGACCATTEST: gi|211385471|gb|FL080437.1|FL080437
genomic: CAATGGAGTTGAGGAGGCCTGCGCCCTCTCCTCTCGTCGACAACTACGTGgtaaatcttc ... ccatggtcagGTACCTGGTGATGTCGTCCTGGACCTCTCCGAGATGAACAACCAGACCATT
EST: CAATGGAGTTGAGGAGGCCTGCGCCCTCTCCTCTCGTCGACAACTACGTG GTACCTGGTGATGTCGTCCTGGACCTCTCCGAGATGAACAACCAGACCATT
genomic: CAATGGAGTTGAGGAGGCCTGCGCCCTCTCCTCTCGTCGACAACTACGTGgtaaatcttc ... ccatggtcagGTACCTGGTGATGTCGTCCTGGACCTCTCCGAGATGAACAACCAGACCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACTTCTCCGAACCTCCTGTCCTCCATACCGGCGCTCCTACCCTCGCTGCAATGGAGTTGAGGAGGCCTGCGCCCTCTCCTCTCGTCGACAACTACGTGgtaaatcttccagccctattccgcaccttgatctctcacttgtgctatctgtgccgatctggtcatcacctcacactgcccaccatggtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC