Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCATTATAGTGCCAGTACCATTCTGCCAGCGAGTTCCTTTGCCACAAAAAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAGgtatgttcgatgcttagagtttatgtattgctcttctgtatagcaacaaaagaataccttttaggtgatcattcacacaaatacgtattcatctcaatcttcagcag

Basic information

species Zea mays
transcript GRMZM5G801369_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71438212|gb|DR819262.1|DR819262
EST:     AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAG                         TGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGG
genomic: AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAGgtatgttcga ... tcttcagcagTGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGG
EST: gi|149075694|gb|EE164238.2|EE164238
EST:     AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAG                         TGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGG
genomic: AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAGgtatgttcga ... tcttcagcagTGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGG
EST: gi|149062889|gb|EE157609.2|EE157609
EST:     AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAGCAG                       
genomic: AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGG-C-C-GCAGgtatgttcga ... tcttcagc
EST: gi|71301944|gb|DR787048.1|DR787048
EST:     AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAGCAG                       
genomic: AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGG-C-C-GCAGgtatgttcga ... tcttcagc