ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

ATGAGAGCAAAAATTCAAAACCAGAGAAGCCATCTTCAGCAGCTGGTGCAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctcttgctattgccttaatatgttttgattaagaatttaagatgcttatgttgtacatagttttttctgccggctgaaccacattcagattcatttggaattgttaattttactatagtgttgtatgctcgtcatgtgcag

Basic information

species	Zea mays
transcript	GRMZM5G800734_T02
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM5G800734_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g33810.5 (Oryza sativa), 5'ss of exon 2

ATGAGAGCAAAAATTCAAA--ACCAGAGAAGCCATCTTCAGCAGCTGGTGCAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctcttgctattgccttaatatgttttgattaagaatttaagatgcttatgttgtacatagttttttctgccggctgaaccacattcagattcatttggaattgttaattttactatagtgttgtatgctcgtcatgtgcag
|  ||||      |        | |  |    |  |  | ||| ||| ||||||||| |||||||| ||||||||||||    | ||||||||||||||||||  |   ||    ||   ||        |  |   |  || |  | | ||  | |||| |||   || |  |     ||| || |   | |  | ||     || ||| |  |    |  ||                       
ACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGCTCCCCCGGCACCTGATGCAGGCCTTCCCAATCCTTTTGATTTTTCTCAGTTTAGCAACTTGCTCAATgtaagttcttt----tttttttcgcgcagctaaaagcatgatatgtgct-ctctttttgtgcatcacttatgtt--taactgtactattcttacgtacac----aactgtaatgtgatgtgcag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211076127|gb|FL369082.1|FL369082

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTTTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|211269360|gb|FL417928.1|FL417928

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|211319046|gb|FL374772.1|FL374772

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|21809484|gb|BQ667802.1|BQ667802

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|213175660|gb|FM183110.1|FM183110

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|116823815|gb|EC867386.1|EC867386

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|22546077|gb|BU098398.1|BU098398

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|211418388|gb|FL391640.1|FL391640

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|20507180|gb|BQ279520.1|BQ279520

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|211042826|gb|FL411665.1|FL411665

EST:     GGCCTTCCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTTTGTTC
genomic: GGCC-T-CCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|13316075|gb|BG410522.1|BG410522

EST:     CAGGCCTCCCCAATCCGATTGANNNNNNNNCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|31558362|gb|CD527574.1|CD527574

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|14242838|gb|BG840655.2|BG840655

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|211062797|gb|FL382546.1|FL382546

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|91869881|gb|EB400588.1|EB400588

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|211525125|gb|FL427343.1|FL427343

EST:     AGTCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTGTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTT
genomic: AGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACT-TGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTT

EST: gi|211082181|gb|FL396892.1|FL396892

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|32860620|gb|CF000302.1|CF000302

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|19058108|gb|BM736775.1|BM736775

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|13316076|gb|BG410523.1|BG410523

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|211387599|gb|FL400575.1|FL400575

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|211051648|gb|FL410420.1|FL410420

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|211490699|gb|FL394416.1|FL394416

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|211050742|gb|FL374473.1|FL374473

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|211322030|gb|FL425792.1|FL425792

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|211494459|gb|FL428225.1|FL428225

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

EST: gi|211377247|gb|FL413756.1|FL413756

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGVACCCTGTGTT
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTG-ACCCTGTGTT

EST: gi|211206607|gb|FL376335.1|FL376335

EST:     CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAAT                         GACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC
genomic: CAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 542

ATGAGAGCAAAAATTCAAAACCAGAGAAGCCATCTTCAGCAGCTGGTGCAGGCCTCCCCAATCCGTTTGATTTTTCTTCTATGAGCAACTTGCTCAATgtatctctct ... tcatgtgcagGACCCATCGATAAGAGAGATGGCTGAGCAAATTGCAAGTGACCCTGTGTTCAACCAGATGGCTGAACAGCTTCAGAAAAGTGCTCAGGGTGCTGGAGAAC

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 635

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 365