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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCCgtgagcaatcagctgtctcgtaccatttctcataacaattacatcgatgcttgtttgcttaggatccgaatacataaatttgggcacttgtaaaggtgga...

Basic information

species Zea mays
transcript GRMZM5G800112_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G800112_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g27850.2 (Oryza sativa), 5'ss of exon 2
ACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCCgtgagcaatcagctgtctcgtaccatttctcataacaattacatcgatgcttgtttgcttaggatccgaatacataaatttgggcacttgtaaaggtgga
| |||||||| || ||||||||||| ||||| || |||||||||||||||||||| || || ||||||||||| | ||| |||||||||  |||  |   | |||| ||| |    |   || |||    |  ||| |||| ||  ||   |                                
ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCAAGCGgctggatgacgacaccgagagccttgcccgtgagtcatcttcaagcccgtatcatcttatttgttaactactaataatctt-tttggttgcgacttgcgag----------------------------

upper sequence: GRMZM5G800112_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g27850.1 (Oryza sativa), 5'ss of exon 2
ACAACGCTGGTACGAACAAGGCGGCATCCAGCGGTACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCCgtgagcaatcagctgtctcgtaccatttctcataacaattacatcgatgcttgtttgcttaggatc-cgaatacataaatttgggcacttgtaaaggtgga
| |||||||| || ||||||||||| ||||| || |||||||||||||||||||| || || ||||||||||| | ||| |||||||||  |||  |   | |||| ||| |    |   || |||    |  ||| || | |  |  |  |||    ||  ||      | || ||        
ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCAAGCGGCTGGATGACGACACCGAGAGCCTTGCCCgtgagtcatcttcaagcccgtatcatcttatttgttaactactaataatctttttggttgcgacttgcgagcttatttatcctaaaagttatacgaccat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211137933|gb|FL090170.1|FL090170
EST:     TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCC                         ATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCATGCAAGCAAGGCTCG
genomic: TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCCgtgagcaatc ... ttaatgctagATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCATGCAAGCAAGGCTCG
EST: gi|211137002|gb|FL090161.1|FL090161
EST:     TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCC                         ATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCATGCAAGCAAGGCTCG
genomic: TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCCgtgagcaatc ... ttaatgctagATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCATGCAAGCAAGGCTCG
EST: gi|211137930|gb|FL090167.1|FL090167
EST:     TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCC                         ATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCA
genomic: TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCCgtgagcaatc ... ttaatgctagATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCA
EST: gi|211137007|gb|FL090166.1|FL090166
EST:     TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCC                         ATGAGCGAGTTTCCAAGTGATCTGAAGAAGAATCTCATGCAAGCAAGGGCT
genomic: TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCCgtgagcaatc ... ttaatgctagATGAGCGAGTT-CCAAGTGATCTGAAGAAGAATCTCATGCAAGCAAGG-CT
EST: gi|101399867|gb|EB821780.1|EB821780
EST:     TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCC                         ATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCATGCAAGCAAGGCTCG
genomic: TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCCgtgagcaatc ... ttaatgctagATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCATGCAAGCAAGGCTCG
EST: gi|211142486|gb|FL118083.1|FL118083
EST:     TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCC                         ATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCATGCAAGCAAGGCTCG
genomic: TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCCgtgagcaatc ... ttaatgctagATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCATGCAAGCAAGGCTCG
EST: gi|211136052|gb|FL090147.1|FL090147
EST:     TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCC                         ATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCATGCAAGCAAGGCTCG
genomic: TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCCgtgagcaatc ... ttaatgctagATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCATGCAAGCAAGGCTCG
EST: gi|15208834|gb|BI430718.1|BI430718
EST:     TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCC                         ATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCATGCAAGCAAGGCTCG
genomic: TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCCgtgagcaatc ... ttaatgctagATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCATGCAAGCAAGGCTCG
EST: gi|211137931|gb|FL090168.1|FL090168
EST:     TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCC-                         ATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCATGCAAGCA
genomic: TACATCCCTCAACACCAAGCGCCTCGACGACGACACCGAAAACCTCGCCCgtgagcaatc ... ttaatgctagATGAGCGAGTTCCAAGTGATCTGAAGAAGAATCTCATGCAAGCA