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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATATGGGGCTGCAGCTGTTTCGCAAGCATCTATCACTATCCCCAGAGATTGAACACAAAACTGTAACTGGCCTTCTCAGATTGATTGAGAGTGAGAGgtatggttaagttctgttagtgatatgtgtacttaatgttatacaaggccatacttactttacaactgattgcatataatatagggcatgtttggttgca...

Basic information

species Zea mays
transcript GRMZM2G704093_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G704093_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g57290.1 (Oryza sativa), 5'ss of exon 3
GGGATATGGGGCTGCAGCTGTTTCGCAAGCATCTATCACTATCCCCAGAGATTGAACACAAAACTGTAACTGGCCTTCTCAGATTGATTGAGAGTGAGAGgtatggttaagttctgttagtgatatgtgtacttaatgttatacaaggccatacttactttacaactgattgcatataatatagggcatgtt-tggttgca--
|||| |||||| || |||| || ||||||||||| ||||| || || |||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||  ||   |    || |||    |||  |     |||      | | || |   | |     ||  ||  | |  | | |||   |   |||  |    
GGGACATGGGGTTGAAGCTATTCCGCAAGCATCTTTCACTGTCTCCGGAGATTGAACACAAAACTGTTACTGGTCTTCTAAGATTAATTGAGAGTGAGAGgtatgcctactctgctgtactgagccatgttgtgtgcattacct---gtcttattgtgtgtgtgtgtgtgtgttttttttttgggggggggggtgggggtggg

upper sequence: GRMZM2G704093_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 3
GGGATATGGGGCTGCAGCTGTTTCGCAAGCATCTATCACTATCCCCAGAGATTGAACACAAAACTGTAACTGGCCTTCTCAGATTGATTGAGAGTGAGAGgtatggttaagttct---gttagtgatatgtgtacttaatgttatacaaggccatacttactttacaactgattgcatataatatagggcatgtttggttgca
||||||||||  ||||||| || ||||| ||||| ||  |||| |||||  |||| ||||||||||||||||| ||  | ||| |||||||||| || |||||      ||| ||    ||   | ||| | |||    | || ||| ||   |||   | ||| ||      |  || | || | ||| || |   ||||  
GGGATATGGGTTTGCAGCTTTTCCGCAAACATCTTTCTTTATCTCCAGAAGTTGAGCACAAAACTGTAACTGGTCTCTTGAGAATGATTGAGAGGGAAAGgtaattcagagtcctcaaatttcagctatttatacaattttttttaccagaatatatacatttttcagagtcctatat-tcatgt-gggtat-tcaagttgtc