ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

ATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaacagacatgcatcactgacttttcctacttttgacttagtaagtagttagctgcaggtactacaaactgaatatatatgaaacttggcata...

Basic information

species	Zea mays
transcript	GRMZM2G568636_T01
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G568636_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g36480.1 (Oryza sativa), 5'ss of exon 2

ATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaacagacatgcatcactgacttttcctacttttgacttagtaagtagttagctgcaggtactacaaactgaatatatatgaaacttggcata--
 | ||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||| |  |   ||  | | ||| |||    | |    |  | | |||| |      |  |  ||||   ||    | |    |   ||     |  |  |   
GTGAACTCGGTGATCACGACGCCCGGGCACGACGAGATCCTGCCCATCAACGGCATCACCACGCAGCGCGGCTACACCATGAAGGGATACGCCTACTCCGgtgagcacg-cactcctccataacttctctctgaatcgctcgccttaatttactctcggtcgcagtggcttgtcattttgcac-catccttttgtgtttgac

upper sequence: GRMZM2G568636_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g36500.1 (Oryza sativa), 5'ss of exon 2

ATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaacagacatgcatcactgacttttcctacttttgacttagtaagtagttagctgcaggtact--acaaactgaatatatatgaaacttggcata
 | ||||||||||| ||| |||| ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||| |  |   ||  | | ||| |||    | |    |  | | |||| |    | |  | |||||   ||   ||   || |      |     ||   |  
GTGAACTCGGTGATCACGGCGCCCGGGCACGACGAGATCCTGCCCATCAACGGCATCACCACGCAGCGCGGCTACACCATGAAGGGATACGCCTACTCCGgtgagcacg-cactcctccataacttctctctgaatcgctcgccttaatttacactcggttgcagtggcttgtcattttgcaccatccttttgtttttgac-

upper sequence: GRMZM2G568636_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA14G33480.1 (Glycine max), 5'ss of exon 2

ATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaacagacatgcatcactgacttttcctacttttgact-tagtaagtagttagctgcaggtactacaaactgaatatatatgaaact--tggcata-
|||||||| ||||||||||||||| | ||| | |||||| |||||||||||      || || ||| |   |||   | ||| ||| ||||| ||  ||||| ||       |   | |||   ||    ||              || ||  |  |||  |      || |   | | |   || | | ||||  |||  |  
ATAAACTCAGTGATAACGACGCCGTGTCACCAGGAGATCTTGCCCATCAACTCATGGACTACGCAGAGGCCCTATCTCCTGAGAGGCTACGCATATACCGgttaatttggt-gtttttcattcttgttactttgaggaaccagtaatattatattatta--tattaacaccatttaataagcgta-agggaactagtggagtga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|148995688|gb|EE034909.2|EE034909

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149079145|gb|EE168076.2|EE168076

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|74235874|gb|DT643788.1|DT643788

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|110221718|gb|EC903616.1|EC903616

EST:     CAACATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149000691|gb|EE037903.2|EE037903

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCGTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149008612|gb|EE040794.2|EE040794

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149069798|gb|EE158184.2|EE158184

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149077879|gb|EE166608.2|EE166608

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148967997|gb|EE019320.2|EE019320

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|88747519|gb|DY531660.1|DY531660

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149102923|gb|EE288274.2|EE288274

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149101371|gb|EE187488.2|EE187488

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149102688|gb|EE288038.2|EE288038

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149013832|gb|EE043309.2|EE043309

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|91876838|gb|EB406795.1|EB406795

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|86472607|gb|DY238977.1|DY238977

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149113199|gb|EE182093.2|EE182093

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|101396856|gb|EB820354.1|EB820354

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149006649|gb|EE040176.2|EE040176

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|76286149|gb|DV025717.1|DV025717

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148945530|gb|EC890778.2|EC890778

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|94474682|gb|EB703640.1|EB703640

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|71772127|gb|DR970064.1|DR970064

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148929576|gb|EC875902.2|EC875902

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149015338|gb|EE045160.2|EE045160

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148933584|gb|EC877455.2|EC877455

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149077425|gb|EE166115.2|EE166115

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|71320193|gb|DR796850.1|DR796850

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148957498|gb|EC903579.2|EC903579

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149071519|gb|EE159911.2|EE159911

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148957935|gb|EC904095.2|EC904095

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148970871|gb|EE021657.2|EE021657

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149026914|gb|EE046266.2|EE046266

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148969958|gb|EE020870.2|EE020870

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|50327341|gb|CO522467.1|CO522467

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|76281939|gb|DV021507.1|DV021507

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149001478|gb|EE038779.2|EE038779

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149083126|gb|EE172388.2|EE172388

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149084449|gb|EE173907.2|EE173907

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACG-C--CTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|110195463|gb|EC877360.1|EC877360

EST:     AGCGGGGCTACACCATGAAAGGATACGGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGC-GGTGGGAGGTGACGCTGGACGGCGGCGAG
genomic: AGCGCGGCTACACCATGAAAGGATAC-GCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGT-GGAGGTGACGCTGGACGGCGGCGAG

EST: gi|148939489|gb|EC884068.2|EC884068

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|76016823|gb|DT943993.1|DT943993

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148987150|gb|EE030978.2|EE030978

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149003165|gb|EE038903.2|EE038903

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|71323274|gb|DR798292.1|DR798292

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148935196|gb|EC879231.2|EC879231

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148939973|gb|EC884703.2|EC884703

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|76010445|gb|DT937615.1|DT937615

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148951960|gb|EC897739.2|EC897739

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148969954|gb|EE020866.2|EE020866

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148964100|gb|EE015257.2|EE015257

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148944335|gb|EC889434.2|EC889434

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148958116|gb|EC904313.2|EC904313

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148966103|gb|EE017045.2|EE017045

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149049728|gb|EE048410.2|EE048410

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|84969683|gb|DW468112.1|DW468112

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|71331316|gb|DR802493.1|DR802493

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|71757612|gb|DR955549.1|DR955549

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|71426257|gb|DR807307.1|DR807307

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|149070535|gb|EE158938.2|EE158938

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|50324280|gb|CO519406.1|CO519406

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148974727|gb|EE025538.2|EE025538

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

EST: gi|148941837|gb|EC886810.2|EC886810

EST:     CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCG                         GCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 26 (upstream exon), 46 (downstream exon)
Score: 3

ATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaa ... gtacacgtagGCGGCGGCAAGAAGGTGACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGACATGGCTGGTGTGCCACCTCGACCACCCGGAGAAGCCCAACAAGTACGG

Block sizes: 44 (upstream exon), 47 (downstream exon)
Score: 3

Block sizes: 33 (upstream exon), 45 (downstream exon)
Score: 4

Block sizes: 49 (upstream exon), 35 (downstream exon)
Score: 13

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAAACTCGGTGATAACGACGCCGGGGCACGACGAGATCCTGCCCATCAACAGCATTACCACACAGCGCGGCTACACCATGAAAGGATACGCCTACTCCGgtaaaaaaaacagacatgcatcactgacttttcctacttttgacttagtaagtagttagctgcaggtactacaaactgaatatatatgaaacttggcata

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