1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttctcttgtctaatttatatttctgaactcatcagatgagtataacatcacatttttccacttttatggttcatgctcaaatttatttatag
species | Zea mays |
transcript | GRMZM2G495626_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|74238747|gb|DT646661.1|DT646661
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|101398284|gb|EB821015.1|EB821015
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|211530153|gb|FL280582.1|FL280582
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCAEST: gi|28568987|gb|CB280862.1|CB280862
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACEST: gi|71771339|gb|DR969276.1|DR969276
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGAC
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|91055879|gb|EB166297.1|EB166297
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|87157025|gb|DY401814.1|DY401814
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|31612143|gb|CD568765.1|CD568765
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAAEST: gi|91868821|gb|EB400169.1|EB400169
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCEST: gi|149085475|gb|EE174981.2|EE174981
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGC
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|76294289|gb|DV033857.1|DV033857
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|91872387|gb|EB402344.1|EB402344
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|148931796|gb|EC877239.2|EC877239
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCCCCG GGATTTAAAGCEST: gi|211362664|gb|FL128442.1|FL128442
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGC
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|88755350|gb|DY539491.1|DY539491
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|22542240|gb|BU092678.1|BU092678
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|78085720|gb|DV514113.1|DV514113
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATACCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGEST: gi|71450237|gb|DR831287.1|DR831287
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTG
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|26559291|gb|CA831526.1|CA831526
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|76289583|gb|DV029151.1|DV029151
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|32929643|gb|CF034455.1|CF034455
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|94473282|gb|EB702240.1|EB702240
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|32928347|gb|CF033159.1|CF033159
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|91878648|gb|EB408605.1|EB408605
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: AGTTATGCAAAGGAGTTTGCCCACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|149110996|gb|EE294495.2|EE294495
genomic: AGTTATGCAAAGGAGTT-GCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|71313277|gb|DR793172.1|DR793172
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAEST: gi|71431609|gb|DR812659.1|DR812659
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
EST: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCG GGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
genomic: CAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttc ... ttatttatagGGATTTAAAGCCACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGTGTCCTTCACCGgttggatttctcttgtctaatttatatttctgaactcatcagatgagtataacatcacatttttccacttttatggttcatgctcaaatttatttatag
- - - - - - - - - GCAAAG
- - - - - - - - - - - AAGGAG